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SLC35E1 (solute carrier family 35 member E1)

Identity

Alias_namessolute carrier family 35, member E1
Alias_symbol (synonym)FLJ14251
Other alias-
HGNC (Hugo) SLC35E1
LocusID (NCBI) 79939
Atlas_Id 73406
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 16549837 and ends at 16572382 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC35E1   20803
Cards
Entrez_Gene (NCBI)SLC35E1  79939  solute carrier family 35 member E1
Aliases
GeneCards (Weizmann)SLC35E1
Ensembl hg19 (Hinxton)ENSG00000127526 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000127526 [Gene_View]  chr19:16549837-16572382 [Contig_View]  SLC35E1 [Vega]
ICGC DataPortalENSG00000127526
TCGA cBioPortalSLC35E1
AceView (NCBI)SLC35E1
Genatlas (Paris)SLC35E1
WikiGenes79939
SOURCE (Princeton)SLC35E1
Genetics Home Reference (NIH)SLC35E1
Genomic and cartography
GoldenPath hg38 (UCSC)SLC35E1  -     chr19:16549837-16572382 -  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC35E1  -     19p13.11   [Description]    (hg19-Feb_2009)
EnsemblSLC35E1 - 19p13.11 [CytoView hg19]  SLC35E1 - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBISLC35E1 [Mapview hg19]  SLC35E1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024313 AK027699 AK027850 AK075355 AL080085
RefSeq transcript (Entrez)NM_024881
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC35E1
Cluster EST : UnigeneHs.620596 [ NCBI ]
CGAP (NCI)Hs.620596
Alternative Splicing GalleryENSG00000127526
Gene ExpressionSLC35E1 [ NCBI-GEO ]   SLC35E1 [ EBI - ARRAY_EXPRESS ]   SLC35E1 [ SEEK ]   SLC35E1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC35E1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79939
GTEX Portal (Tissue expression)SLC35E1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96K37   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96K37  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96K37
Splice isoforms : SwissVarQ96K37
PhosPhoSitePlusQ96K37
Domains : Interpro (EBI)Sugar_P_trans_dom   
Domain families : Pfam (Sanger)TPT (PF03151)   
Domain families : Pfam (NCBI)pfam03151   
Conserved Domain (NCBI)SLC35E1
DMDM Disease mutations79939
Blocks (Seattle)SLC35E1
SuperfamilyQ96K37
Human Protein AtlasENSG00000127526
Peptide AtlasQ96K37
HPRD15373
IPIIPI00101952   IPI00410697   IPI00941511   IPI00746878   IPI00916105   IPI00942628   
Protein Interaction databases
DIP (DOE-UCLA)Q96K37
IntAct (EBI)Q96K37
FunCoupENSG00000127526
BioGRIDSLC35E1
STRING (EMBL)SLC35E1
ZODIACSLC35E1
Ontologies - Pathways
QuickGOQ96K37
Ontology : AmiGOGolgi apparatus  transport  integral component of membrane  
Ontology : EGO-EBIGolgi apparatus  transport  integral component of membrane  
NDEx NetworkSLC35E1
Atlas of Cancer Signalling NetworkSLC35E1
Wikipedia pathwaysSLC35E1
Orthology - Evolution
OrthoDB79939
GeneTree (enSembl)ENSG00000127526
Phylogenetic Trees/Animal Genes : TreeFamSLC35E1
HOVERGENQ96K37
HOGENOMQ96K37
Homologs : HomoloGeneSLC35E1
Homology/Alignments : Family Browser (UCSC)SLC35E1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC35E1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC35E1
dbVarSLC35E1
ClinVarSLC35E1
1000_GenomesSLC35E1 
Exome Variant ServerSLC35E1
ExAC (Exome Aggregation Consortium)SLC35E1 (select the gene name)
Genetic variants : HAPMAP79939
Genomic Variants (DGV)SLC35E1 [DGVbeta]
DECIPHERSLC35E1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC35E1 
Mutations
ICGC Data PortalSLC35E1 
TCGA Data PortalSLC35E1 
Broad Tumor PortalSLC35E1
OASIS PortalSLC35E1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC35E1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC35E1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC35E1
DgiDB (Drug Gene Interaction Database)SLC35E1
DoCM (Curated mutations)SLC35E1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC35E1 (select a term)
intoGenSLC35E1
Cancer3DSLC35E1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSLC35E1
Genetic Testing Registry SLC35E1
NextProtQ96K37 [Medical]
TSGene79939
GENETestsSLC35E1
Target ValidationSLC35E1
Huge Navigator SLC35E1 [HugePedia]
snp3D : Map Gene to Disease79939
BioCentury BCIQSLC35E1
ClinGenSLC35E1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79939
Chemical/Pharm GKB GenePA134916810
Clinical trialSLC35E1
Miscellaneous
canSAR (ICR)SLC35E1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC35E1
EVEXSLC35E1
GoPubMedSLC35E1
iHOPSLC35E1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:38:09 CEST 2017

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