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SLC35E2B (solute carrier family 35 member E2B)

Identity

Alias_namessolute carrier family 35, member E2B
Other aliasSLC35E2
HGNC (Hugo) SLC35E2B
LocusID (NCBI) 728661
Atlas_Id 73407
Location 1p36.33  [Link to chromosome band 1p36]
Location_base_pair Starts at 1661478 and ends at 1692804 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RBM27 (5q32) / SLC35E2B (1p36.33)SLC35E2B (1p36.33) / CDK11A (1p36.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC35E2B   33941
Cards
Entrez_Gene (NCBI)SLC35E2B  728661  solute carrier family 35 member E2B
AliasesSLC35E2
GeneCards (Weizmann)SLC35E2B
Ensembl hg19 (Hinxton)ENSG00000189339 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000189339 [Gene_View]  chr1:1661478-1692804 [Contig_View]  SLC35E2B [Vega]
ICGC DataPortalENSG00000189339
TCGA cBioPortalSLC35E2B
AceView (NCBI)SLC35E2B
Genatlas (Paris)SLC35E2B
WikiGenes728661
SOURCE (Princeton)SLC35E2B
Genetics Home Reference (NIH)SLC35E2B
Genomic and cartography
GoldenPath hg38 (UCSC)SLC35E2B  -     chr1:1661478-1692804 -  1p36.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC35E2B  -     1p36.33   [Description]    (hg19-Feb_2009)
EnsemblSLC35E2B - 1p36.33 [CytoView hg19]  SLC35E2B - 1p36.33 [CytoView hg38]
Mapping of homologs : NCBISLC35E2B [Mapview hg19]  SLC35E2B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB007916 AK022944 AK092311 AK125619 AK307886
RefSeq transcript (Entrez)NM_001110781 NM_001290264
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC35E2B
Cluster EST : UnigeneHs.655255 [ NCBI ]
CGAP (NCI)Hs.655255
Alternative Splicing GalleryENSG00000189339
Gene ExpressionSLC35E2B [ NCBI-GEO ]   SLC35E2B [ EBI - ARRAY_EXPRESS ]   SLC35E2B [ SEEK ]   SLC35E2B [ MEM ]
Gene Expression Viewer (FireBrowse)SLC35E2B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728661
GTEX Portal (Tissue expression)SLC35E2B
Human Protein AtlasENSG00000189339-SLC35E2B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CK96   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CK96  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CK96
Splice isoforms : SwissVarP0CK96
PhosPhoSitePlusP0CK96
Domains : Interpro (EBI)Sugar_P_trans_dom   
Domain families : Pfam (Sanger)TPT (PF03151)   
Domain families : Pfam (NCBI)pfam03151   
Conserved Domain (NCBI)SLC35E2B
DMDM Disease mutations728661
Blocks (Seattle)SLC35E2B
SuperfamilyP0CK96
Human Protein Atlas [tissue]ENSG00000189339-SLC35E2B [tissue]
Peptide AtlasP0CK96
IPIIPI00829633   
Protein Interaction databases
DIP (DOE-UCLA)P0CK96
IntAct (EBI)P0CK96
FunCoupENSG00000189339
BioGRIDSLC35E2B
STRING (EMBL)SLC35E2B
ZODIACSLC35E2B
Ontologies - Pathways
QuickGOP0CK96
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkSLC35E2B
Atlas of Cancer Signalling NetworkSLC35E2B
Wikipedia pathwaysSLC35E2B
Orthology - Evolution
OrthoDB728661
GeneTree (enSembl)ENSG00000189339
Phylogenetic Trees/Animal Genes : TreeFamSLC35E2B
HOVERGENP0CK96
HOGENOMP0CK96
Homologs : HomoloGeneSLC35E2B
Homology/Alignments : Family Browser (UCSC)SLC35E2B
Gene fusions - Rearrangements
Fusion: Tumor Portal SLC35E2B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC35E2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC35E2B
dbVarSLC35E2B
ClinVarSLC35E2B
1000_GenomesSLC35E2B 
Exome Variant ServerSLC35E2B
ExAC (Exome Aggregation Consortium)ENSG00000189339
GNOMAD BrowserENSG00000189339
Genetic variants : HAPMAP728661
Genomic Variants (DGV)SLC35E2B [DGVbeta]
DECIPHERSLC35E2B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC35E2B 
Mutations
ICGC Data PortalSLC35E2B 
TCGA Data PortalSLC35E2B 
Broad Tumor PortalSLC35E2B
OASIS PortalSLC35E2B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC35E2B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC35E2B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC35E2B
DgiDB (Drug Gene Interaction Database)SLC35E2B
DoCM (Curated mutations)SLC35E2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC35E2B (select a term)
intoGenSLC35E2B
Cancer3DSLC35E2B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSLC35E2B
Genetic Testing Registry SLC35E2B
NextProtP0CK96 [Medical]
TSGene728661
GENETestsSLC35E2B
Target ValidationSLC35E2B
Huge Navigator SLC35E2B [HugePedia]
snp3D : Map Gene to Disease728661
BioCentury BCIQSLC35E2B
ClinGenSLC35E2B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728661
Chemical/Pharm GKB GenePA165752386
Clinical trialSLC35E2B
Miscellaneous
canSAR (ICR)SLC35E2B (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC35E2B
EVEXSLC35E2B
GoPubMedSLC35E2B
iHOPSLC35E2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:27:35 CET 2017

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