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SLC35E3 (solute carrier family 35 member E3)

Identity

Alias_namessolute carrier family 35
Alias_symbol (synonym)BLOV1
Other alias
HGNC (Hugo) SLC35E3
LocusID (NCBI) 55508
Atlas_Id 42323
Location 12q15  [Link to chromosome band 12q15]
Location_base_pair Starts at 69139936 and ends at 69159853 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
BCHE (3q26.1) / SLC35E3 (12q15)C12orf49 (12q24.22) / SLC35E3 (12q15)SLC35E3 (12q15) / ARCN1 (11q23.3)
SLC35E3 (12q15) / CACNA2D4 (12p13.33)SLC35E3 (12q15) / NUP107 (12q15)SLC35E3 (12q15) / OS9 (12q13.3)
SLC35E3 (12q15) / SLC35E3 (12q15)YEATS4 (12q15) / SLC35E3 (12q15)C12orf49 12q24.22 / SLC35E3 12q15
SLC35E3 12q15 / OS9 12q13.3YEATS4 12q15 / SLC35E3 12q15

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC35E3   20864
Cards
Entrez_Gene (NCBI)SLC35E3  55508  solute carrier family 35 member E3
AliasesBLOV1
GeneCards (Weizmann)SLC35E3
Ensembl hg19 (Hinxton)ENSG00000175782 [Gene_View]  chr12:69139936-69159853 [Contig_View]  SLC35E3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000175782 [Gene_View]  chr12:69139936-69159853 [Contig_View]  SLC35E3 [Vega]
ICGC DataPortalENSG00000175782
TCGA cBioPortalSLC35E3
AceView (NCBI)SLC35E3
Genatlas (Paris)SLC35E3
WikiGenes55508
SOURCE (Princeton)SLC35E3
Genetics Home Reference (NIH)SLC35E3
Genomic and cartography
GoldenPath hg19 (UCSC)SLC35E3  -     chr12:69139936-69159853 +  12q15   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC35E3  -     12q15   [Description]    (hg38-Dec_2013)
EnsemblSLC35E3 - 12q15 [CytoView hg19]  SLC35E3 - 12q15 [CytoView hg38]
Mapping of homologs : NCBISLC35E3 [Mapview hg19]  SLC35E3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA491309 AF148713 AK289645 AY358943 BC008412
RefSeq transcript (Entrez)NM_018656
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)SLC35E3
Cluster EST : UnigeneHs.506011 [ NCBI ]
CGAP (NCI)Hs.506011
Alternative Splicing GalleryENSG00000175782
Gene ExpressionSLC35E3 [ NCBI-GEO ]   SLC35E3 [ EBI - ARRAY_EXPRESS ]   SLC35E3 [ SEEK ]   SLC35E3 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC35E3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55508
GTEX Portal (Tissue expression)SLC35E3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z769   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z769  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z769
Splice isoforms : SwissVarQ7Z769
PhosPhoSitePlusQ7Z769
Domains : Interpro (EBI)Sugar_P_trans_dom   
Domain families : Pfam (Sanger)TPT (PF03151)   
Domain families : Pfam (NCBI)pfam03151   
Conserved Domain (NCBI)SLC35E3
DMDM Disease mutations55508
Blocks (Seattle)SLC35E3
SuperfamilyQ7Z769
Human Protein AtlasENSG00000175782
Peptide AtlasQ7Z769
HPRD15375
IPIIPI00032873   IPI01011115   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z769
IntAct (EBI)Q7Z769
FunCoupENSG00000175782
BioGRIDSLC35E3
STRING (EMBL)SLC35E3
ZODIACSLC35E3
Ontologies - Pathways
QuickGOQ7Z769
Ontology : AmiGOnucleotide-sugar transmembrane transporter activity  integral component of membrane  carbohydrate derivative transport  nucleotide transmembrane transport  
Ontology : EGO-EBInucleotide-sugar transmembrane transporter activity  integral component of membrane  carbohydrate derivative transport  nucleotide transmembrane transport  
NDEx NetworkSLC35E3
Atlas of Cancer Signalling NetworkSLC35E3
Wikipedia pathwaysSLC35E3
Orthology - Evolution
OrthoDB55508
GeneTree (enSembl)ENSG00000175782
Phylogenetic Trees/Animal Genes : TreeFamSLC35E3
HOVERGENQ7Z769
HOGENOMQ7Z769
Homologs : HomoloGeneSLC35E3
Homology/Alignments : Family Browser (UCSC)SLC35E3
Gene fusions - Rearrangements
Fusion : MitelmanC12orf49/SLC35E3 [12q24.22/12q15]  [t(12;12)(q15;q24)]  
Fusion: TCGAC12orf49 12q24.22 SLC35E3 12q15 GBM
Fusion: TCGASLC35E3 12q15 OS9 12q13.3 GBM
Fusion: TCGAYEATS4 12q15 SLC35E3 12q15 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC35E3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC35E3
dbVarSLC35E3
ClinVarSLC35E3
1000_GenomesSLC35E3 
Exome Variant ServerSLC35E3
ExAC (Exome Aggregation Consortium)SLC35E3 (select the gene name)
Genetic variants : HAPMAP55508
Genomic Variants (DGV)SLC35E3 [DGVbeta]
DECIPHER (Syndromes)12:69139936-69159853  ENSG00000175782
CONAN: Copy Number AnalysisSLC35E3 
Mutations
ICGC Data PortalSLC35E3 
TCGA Data PortalSLC35E3 
Broad Tumor PortalSLC35E3
OASIS PortalSLC35E3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC35E3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC35E3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC35E3
DgiDB (Drug Gene Interaction Database)SLC35E3
DoCM (Curated mutations)SLC35E3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC35E3 (select a term)
intoGenSLC35E3
Cancer3DSLC35E3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSLC35E3
Genetic Testing Registry SLC35E3
NextProtQ7Z769 [Medical]
TSGene55508
GENETestsSLC35E3
Huge Navigator SLC35E3 [HugePedia]
snp3D : Map Gene to Disease55508
BioCentury BCIQSLC35E3
ClinGenSLC35E3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55508
Chemical/Pharm GKB GenePA128394684
Clinical trialSLC35E3
Miscellaneous
canSAR (ICR)SLC35E3 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC35E3
EVEXSLC35E3
GoPubMedSLC35E3
iHOPSLC35E3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:27:50 CET 2017

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