Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SLC35E4 (solute carrier family 35 member E4)

Identity

Alias (NCBI)-
HGNC (Hugo) SLC35E4
HGNC Previous namesolute carrier family 35, member E4
LocusID (NCBI) 339665
Atlas_Id 73408
Location 22q12.2  [Link to chromosome band 22q12]
Location_base_pair Starts at 30635815 and ends at 30669016 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SLC35E4 (22q12.2) / PIK3CD (1p36.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SLC35E4   17058
Cards
Entrez_Gene (NCBI)SLC35E4    solute carrier family 35 member E4
Aliases
GeneCards (Weizmann)SLC35E4
Ensembl hg19 (Hinxton)ENSG00000100036 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100036 [Gene_View]  ENSG00000100036 [Sequence]  chr22:30635815-30669016 [Contig_View]  SLC35E4 [Vega]
ICGC DataPortalENSG00000100036
TCGA cBioPortalSLC35E4
AceView (NCBI)SLC35E4
Genatlas (Paris)SLC35E4
SOURCE (Princeton)SLC35E4
Genetics Home Reference (NIH)SLC35E4
Genomic and cartography
GoldenPath hg38 (UCSC)SLC35E4  -     chr22:30635815-30669016 +  22q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC35E4  -     22q12.2   [Description]    (hg19-Feb_2009)
GoldenPathSLC35E4 - 22q12.2 [CytoView hg19]  SLC35E4 - 22q12.2 [CytoView hg38]
ImmunoBaseENSG00000100036
genome Data Viewer NCBISLC35E4 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC031973 BC040191 BC063569 BC093099 BC107119
RefSeq transcript (Entrez)NM_001001479 NM_001318370 NM_001318371
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC35E4
Alternative Splicing GalleryENSG00000100036
Gene ExpressionSLC35E4 [ NCBI-GEO ]   SLC35E4 [ EBI - ARRAY_EXPRESS ]   SLC35E4 [ SEEK ]   SLC35E4 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC35E4 [ Firebrowse - Broad ]
GenevisibleExpression of SLC35E4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339665
GTEX Portal (Tissue expression)SLC35E4
Human Protein AtlasENSG00000100036-SLC35E4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ICL7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ICL7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ICL7
Splice isoforms : SwissVarQ6ICL7
PhosPhoSitePlusQ6ICL7
Domains : Interpro (EBI)Sugar_P_trans_dom   
Domain families : Pfam (Sanger)TPT (PF03151)   
Domain families : Pfam (NCBI)pfam03151   
Conserved Domain (NCBI)SLC35E4
Blocks (Seattle)SLC35E4
SuperfamilyQ6ICL7
Human Protein Atlas [tissue]ENSG00000100036-SLC35E4 [tissue]
Peptide AtlasQ6ICL7
HPRD15376
IPIIPI00086503   IPI00555706   IPI00879196   
Protein Interaction databases
DIP (DOE-UCLA)Q6ICL7
IntAct (EBI)Q6ICL7
BioGRIDSLC35E4
STRING (EMBL)SLC35E4
ZODIACSLC35E4
Ontologies - Pathways
QuickGOQ6ICL7
Ontology : AmiGOGolgi apparatus  pyrimidine nucleotide-sugar transmembrane transporter activity  antiporter activity  integral component of membrane  transmembrane transporter activity  pyrimidine nucleotide-sugar transmembrane transport  
Ontology : EGO-EBIGolgi apparatus  pyrimidine nucleotide-sugar transmembrane transporter activity  antiporter activity  integral component of membrane  transmembrane transporter activity  pyrimidine nucleotide-sugar transmembrane transport  
NDEx NetworkSLC35E4
Atlas of Cancer Signalling NetworkSLC35E4
Wikipedia pathwaysSLC35E4
Orthology - Evolution
OrthoDB339665
GeneTree (enSembl)ENSG00000100036
Phylogenetic Trees/Animal Genes : TreeFamSLC35E4
HOGENOMQ6ICL7
Homologs : HomoloGeneSLC35E4
Homology/Alignments : Family Browser (UCSC)SLC35E4
Gene fusions - Rearrangements
Fusion : QuiverSLC35E4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC35E4 [hg38]
dbVarSLC35E4
ClinVarSLC35E4
MonarchSLC35E4
1000_GenomesSLC35E4 
Exome Variant ServerSLC35E4
GNOMAD BrowserENSG00000100036
Varsome BrowserSLC35E4
Genomic Variants (DGV)SLC35E4 [DGVbeta]
DECIPHERSLC35E4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC35E4 
Mutations
ICGC Data PortalSLC35E4 
TCGA Data PortalSLC35E4 
Broad Tumor PortalSLC35E4
OASIS PortalSLC35E4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC35E4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSLC35E4
Mutations and Diseases : HGMDSLC35E4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC35E4
DgiDB (Drug Gene Interaction Database)SLC35E4
DoCM (Curated mutations)SLC35E4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC35E4 (select a term)
intoGenSLC35E4
Cancer3DSLC35E4(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSLC35E4
MedgenSLC35E4
Genetic Testing Registry SLC35E4
NextProtQ6ICL7 [Medical]
GENETestsSLC35E4
Target ValidationSLC35E4
Huge Navigator SLC35E4 [HugePedia]
ClinGenSLC35E4
Clinical trials, drugs, therapy
MyCancerGenomeSLC35E4
Protein Interactions : CTD
Pharm GKB GenePA134883803
Clinical trialSLC35E4
Miscellaneous
canSAR (ICR)SLC35E4 (select the gene name)
HarmonizomeSLC35E4
DataMed IndexSLC35E4
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC35E4
EVEXSLC35E4
GoPubMedSLC35E4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:27:13 CET 2020
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