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SLC35E4 (solute carrier family 35 member E4)

Identity

Alias_namessolute carrier family 35, member E4
Other alias-
HGNC (Hugo) SLC35E4
LocusID (NCBI) 339665
Atlas_Id 73408
Location 22q12.2  [Link to chromosome band 22q12]
Location_base_pair Starts at 30635815 and ends at 30647893 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SLC35E4 (22q12.2) / PIK3CD (1p36.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC35E4   17058
Cards
Entrez_Gene (NCBI)SLC35E4  339665  solute carrier family 35 member E4
Aliases
GeneCards (Weizmann)SLC35E4
Ensembl hg19 (Hinxton)ENSG00000100036 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100036 [Gene_View]  chr22:30635815-30647893 [Contig_View]  SLC35E4 [Vega]
ICGC DataPortalENSG00000100036
TCGA cBioPortalSLC35E4
AceView (NCBI)SLC35E4
Genatlas (Paris)SLC35E4
WikiGenes339665
SOURCE (Princeton)SLC35E4
Genetics Home Reference (NIH)SLC35E4
Genomic and cartography
GoldenPath hg38 (UCSC)SLC35E4  -     chr22:30635815-30647893 +  22q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC35E4  -     22q12.2   [Description]    (hg19-Feb_2009)
EnsemblSLC35E4 - 22q12.2 [CytoView hg19]  SLC35E4 - 22q12.2 [CytoView hg38]
Mapping of homologs : NCBISLC35E4 [Mapview hg19]  SLC35E4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC031973 BC040191 BC063569 BC093099 BC107119
RefSeq transcript (Entrez)NM_001001479 NM_001318370 NM_001318371
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC35E4
Cluster EST : UnigeneHs.660384 [ NCBI ]
CGAP (NCI)Hs.660384
Alternative Splicing GalleryENSG00000100036
Gene ExpressionSLC35E4 [ NCBI-GEO ]   SLC35E4 [ EBI - ARRAY_EXPRESS ]   SLC35E4 [ SEEK ]   SLC35E4 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC35E4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339665
GTEX Portal (Tissue expression)SLC35E4
Human Protein AtlasENSG00000100036-SLC35E4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ICL7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ICL7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ICL7
Splice isoforms : SwissVarQ6ICL7
PhosPhoSitePlusQ6ICL7
Domains : Interpro (EBI)Sugar_P_trans_dom   
Domain families : Pfam (Sanger)TPT (PF03151)   
Domain families : Pfam (NCBI)pfam03151   
Conserved Domain (NCBI)SLC35E4
DMDM Disease mutations339665
Blocks (Seattle)SLC35E4
SuperfamilyQ6ICL7
Human Protein Atlas [tissue]ENSG00000100036-SLC35E4 [tissue]
Peptide AtlasQ6ICL7
HPRD15376
IPIIPI00086503   IPI00555706   IPI00879196   
Protein Interaction databases
DIP (DOE-UCLA)Q6ICL7
IntAct (EBI)Q6ICL7
FunCoupENSG00000100036
BioGRIDSLC35E4
STRING (EMBL)SLC35E4
ZODIACSLC35E4
Ontologies - Pathways
QuickGOQ6ICL7
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkSLC35E4
Atlas of Cancer Signalling NetworkSLC35E4
Wikipedia pathwaysSLC35E4
Orthology - Evolution
OrthoDB339665
GeneTree (enSembl)ENSG00000100036
Phylogenetic Trees/Animal Genes : TreeFamSLC35E4
HOVERGENQ6ICL7
HOGENOMQ6ICL7
Homologs : HomoloGeneSLC35E4
Homology/Alignments : Family Browser (UCSC)SLC35E4
Gene fusions - Rearrangements
Fusion: Tumor Portal SLC35E4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC35E4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC35E4
dbVarSLC35E4
ClinVarSLC35E4
1000_GenomesSLC35E4 
Exome Variant ServerSLC35E4
ExAC (Exome Aggregation Consortium)ENSG00000100036
GNOMAD BrowserENSG00000100036
Genetic variants : HAPMAP339665
Genomic Variants (DGV)SLC35E4 [DGVbeta]
DECIPHERSLC35E4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC35E4 
Mutations
ICGC Data PortalSLC35E4 
TCGA Data PortalSLC35E4 
Broad Tumor PortalSLC35E4
OASIS PortalSLC35E4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC35E4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC35E4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC35E4
DgiDB (Drug Gene Interaction Database)SLC35E4
DoCM (Curated mutations)SLC35E4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC35E4 (select a term)
intoGenSLC35E4
Cancer3DSLC35E4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSLC35E4
Genetic Testing Registry SLC35E4
NextProtQ6ICL7 [Medical]
TSGene339665
GENETestsSLC35E4
Target ValidationSLC35E4
Huge Navigator SLC35E4 [HugePedia]
snp3D : Map Gene to Disease339665
BioCentury BCIQSLC35E4
ClinGenSLC35E4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339665
Chemical/Pharm GKB GenePA134883803
Clinical trialSLC35E4
Miscellaneous
canSAR (ICR)SLC35E4 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC35E4
EVEXSLC35E4
GoPubMedSLC35E4
iHOPSLC35E4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:27:35 CET 2017

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