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SLC35F1 (solute carrier family 35 member F1)

Identity

Alias_namesC6orf169
chromosome 6 open reading frame 169
solute carrier family 35, member F1
Alias_symbol (synonym)dJ230I3.1
Other alias
HGNC (Hugo) SLC35F1
LocusID (NCBI) 222553
Atlas_Id 73409
Location 6q22.2  [Link to chromosome band 6q22]
Location_base_pair Starts at 117907526 and ends at 118317676 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PKIB (6q22.31) / SLC35F1 (6q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(6;6)(q22;q22) NT5DC1/SLC35F1
t(6;6)(q22;q22) PKIB/SLC35F1


External links

Nomenclature
HGNC (Hugo)SLC35F1   21483
Cards
Entrez_Gene (NCBI)SLC35F1  222553  solute carrier family 35 member F1
AliasesC6orf169; dJ230I3.1
GeneCards (Weizmann)SLC35F1
Ensembl hg19 (Hinxton)ENSG00000196376 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196376 [Gene_View]  ENSG00000196376 [Sequence]  chr6:117907526-118317676 [Contig_View]  SLC35F1 [Vega]
ICGC DataPortalENSG00000196376
TCGA cBioPortalSLC35F1
AceView (NCBI)SLC35F1
Genatlas (Paris)SLC35F1
WikiGenes222553
SOURCE (Princeton)SLC35F1
Genetics Home Reference (NIH)SLC35F1
Genomic and cartography
GoldenPath hg38 (UCSC)SLC35F1  -     chr6:117907526-118317676 +  6q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC35F1  -     6q22.2   [Description]    (hg19-Feb_2009)
EnsemblSLC35F1 - 6q22.2 [CytoView hg19]  SLC35F1 - 6q22.2 [CytoView hg38]
Mapping of homologs : NCBISLC35F1 [Mapview hg19]  SLC35F1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092207 AK128717 AK295860 BC028615 BC036493
RefSeq transcript (Entrez)NM_001029858
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC35F1
Cluster EST : UnigeneHs.654841 [ NCBI ]
CGAP (NCI)Hs.654841
Alternative Splicing GalleryENSG00000196376
Gene ExpressionSLC35F1 [ NCBI-GEO ]   SLC35F1 [ EBI - ARRAY_EXPRESS ]   SLC35F1 [ SEEK ]   SLC35F1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC35F1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)222553
GTEX Portal (Tissue expression)SLC35F1
Human Protein AtlasENSG00000196376-SLC35F1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T1Q4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T1Q4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T1Q4
Splice isoforms : SwissVarQ5T1Q4
PhosPhoSitePlusQ5T1Q4
Domains : Interpro (EBI)SLC35_F1/F2/F6   
Domain families : Pfam (Sanger)SLC35F (PF06027)   
Domain families : Pfam (NCBI)pfam06027   
Conserved Domain (NCBI)SLC35F1
DMDM Disease mutations222553
Blocks (Seattle)SLC35F1
SuperfamilyQ5T1Q4
Human Protein Atlas [tissue]ENSG00000196376-SLC35F1 [tissue]
Peptide AtlasQ5T1Q4
HPRD18751
IPIIPI00299619   
Protein Interaction databases
DIP (DOE-UCLA)Q5T1Q4
IntAct (EBI)Q5T1Q4
FunCoupENSG00000196376
BioGRIDSLC35F1
STRING (EMBL)SLC35F1
ZODIACSLC35F1
Ontologies - Pathways
QuickGOQ5T1Q4
Ontology : AmiGOtransport  integral component of membrane  
Ontology : EGO-EBItransport  integral component of membrane  
NDEx NetworkSLC35F1
Atlas of Cancer Signalling NetworkSLC35F1
Wikipedia pathwaysSLC35F1
Orthology - Evolution
OrthoDB222553
GeneTree (enSembl)ENSG00000196376
Phylogenetic Trees/Animal Genes : TreeFamSLC35F1
HOVERGENQ5T1Q4
HOGENOMQ5T1Q4
Homologs : HomoloGeneSLC35F1
Homology/Alignments : Family Browser (UCSC)SLC35F1
Gene fusions - Rearrangements
Fusion : QuiverSLC35F1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC35F1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC35F1
dbVarSLC35F1
ClinVarSLC35F1
1000_GenomesSLC35F1 
Exome Variant ServerSLC35F1
ExAC (Exome Aggregation Consortium)ENSG00000196376
GNOMAD BrowserENSG00000196376
Varsome BrowserSLC35F1
Genetic variants : HAPMAP222553
Genomic Variants (DGV)SLC35F1 [DGVbeta]
DECIPHERSLC35F1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC35F1 
Mutations
ICGC Data PortalSLC35F1 
TCGA Data PortalSLC35F1 
Broad Tumor PortalSLC35F1
OASIS PortalSLC35F1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC35F1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC35F1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC35F1
DgiDB (Drug Gene Interaction Database)SLC35F1
DoCM (Curated mutations)SLC35F1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC35F1 (select a term)
intoGenSLC35F1
Cancer3DSLC35F1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSLC35F1
MedgenSLC35F1
Genetic Testing Registry SLC35F1
NextProtQ5T1Q4 [Medical]
TSGene222553
GENETestsSLC35F1
Target ValidationSLC35F1
Huge Navigator SLC35F1 [HugePedia]
snp3D : Map Gene to Disease222553
BioCentury BCIQSLC35F1
ClinGenSLC35F1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD222553
Chemical/Pharm GKB GenePA134985447
Clinical trialSLC35F1
Miscellaneous
canSAR (ICR)SLC35F1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC35F1
EVEXSLC35F1
GoPubMedSLC35F1
iHOPSLC35F1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:29:28 CEST 2018

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