SLC35F1 (solute carrier family 35 member F1)

2014-11-01  

Identity

HGNC
SLC35F1
LOCATION
6q22.2
LOCUSID
222553
ALIAS
C6orf169,dJ230I3.1
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 222553
HGNC: 21483
Ensembl: ENSG00000196376

Variants:

dbSNP: 222553
ClinVar: 222553
TCGA: ENSG00000196376
COSMIC: SLC35F1

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000196376ENST00000360388Q5T1Q4
ENSG00000196376ENST00000621341Q5T1Q4

Expression (GTEx)

0
5
10
15
20
25
30
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
195843462009Genetic variants associated with cardiac structure and function: a meta-analysis and replication of genome-wide association data.93
203796142010Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.62
206393922010Genome-wide association analysis identifies multiple loci related to resting heart rate.61
202009532010Genome-wide pleiotropy of osteoporosis-related phenotypes: the Framingham Study.27

Citation

Dessen P

SLC35F1 (solute carrier family 35 member F1)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/73409/slc35f1