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SLC35F2 (solute carrier family 35, member F2)

Identity

Alias_namessolute carrier family 35, member F2
Alias_symbol (synonym)FLJ13018
Other aliasHSNOV1
HGNC (Hugo) SLC35F2
LocusID (NCBI) 54733
Atlas_Id 73410
Location 11q22.3  [Link to chromosome band 11q22]
Location_base_pair Starts at 107661717 and ends at 107729914 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DAG1 (3p21.31) / SLC35F2 (11q22.3)SLC35F2 (11q22.3) / PIWIL4 (11q21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC35F2   23615
Cards
Entrez_Gene (NCBI)SLC35F2  54733  solute carrier family 35, member F2
AliasesHSNOV1
GeneCards (Weizmann)SLC35F2
Ensembl hg19 (Hinxton)ENSG00000110660 [Gene_View]  chr11:107661717-107729914 [Contig_View]  SLC35F2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000110660 [Gene_View]  chr11:107661717-107729914 [Contig_View]  SLC35F2 [Vega]
ICGC DataPortalENSG00000110660
TCGA cBioPortalSLC35F2
AceView (NCBI)SLC35F2
Genatlas (Paris)SLC35F2
WikiGenes54733
SOURCE (Princeton)SLC35F2
Genetics Home Reference (NIH)SLC35F2
Genomic and cartography
GoldenPath hg19 (UCSC)SLC35F2  -     chr11:107661717-107729914 -  11q22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC35F2  -     11q22.3   [Description]    (hg38-Dec_2013)
EnsemblSLC35F2 - 11q22.3 [CytoView hg19]  SLC35F2 - 11q22.3 [CytoView hg38]
Mapping of homologs : NCBISLC35F2 [Mapview hg19]  SLC35F2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023080 AK128062 AK300582 AL833969 AY078178
RefSeq transcript (Entrez)NM_017515
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_033899 NW_004929381
Consensus coding sequences : CCDS (NCBI)SLC35F2
Cluster EST : UnigeneHs.524014 [ NCBI ]
CGAP (NCI)Hs.524014
Alternative Splicing GalleryENSG00000110660
Gene ExpressionSLC35F2 [ NCBI-GEO ]   SLC35F2 [ EBI - ARRAY_EXPRESS ]   SLC35F2 [ SEEK ]   SLC35F2 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC35F2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54733
GTEX Portal (Tissue expression)SLC35F2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IXU6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IXU6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IXU6
Splice isoforms : SwissVarQ8IXU6
PhosPhoSitePlusQ8IXU6
Domains : Interpro (EBI)SLC35_F1/F2/F6   
Domain families : Pfam (Sanger)DUF914 (PF06027)   
Domain families : Pfam (NCBI)pfam06027   
Conserved Domain (NCBI)SLC35F2
DMDM Disease mutations54733
Blocks (Seattle)SLC35F2
SuperfamilyQ8IXU6
Human Protein AtlasENSG00000110660
Peptide AtlasQ8IXU6
HPRD15377
IPIIPI00293362   IPI00868985   IPI00848215   IPI00382991   IPI00978262   IPI00982631   IPI00979325   
Protein Interaction databases
DIP (DOE-UCLA)Q8IXU6
IntAct (EBI)Q8IXU6
FunCoupENSG00000110660
BioGRIDSLC35F2
STRING (EMBL)SLC35F2
ZODIACSLC35F2
Ontologies - Pathways
QuickGOQ8IXU6
Ontology : AmiGOmolecular_function  cellular_component  transport  biological_process  integral component of membrane  
Ontology : EGO-EBImolecular_function  cellular_component  transport  biological_process  integral component of membrane  
NDEx NetworkSLC35F2
Atlas of Cancer Signalling NetworkSLC35F2
Wikipedia pathwaysSLC35F2
Orthology - Evolution
OrthoDB54733
GeneTree (enSembl)ENSG00000110660
Phylogenetic Trees/Animal Genes : TreeFamSLC35F2
HOVERGENQ8IXU6
HOGENOMQ8IXU6
Homologs : HomoloGeneSLC35F2
Homology/Alignments : Family Browser (UCSC)SLC35F2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC35F2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC35F2
dbVarSLC35F2
ClinVarSLC35F2
1000_GenomesSLC35F2 
Exome Variant ServerSLC35F2
ExAC (Exome Aggregation Consortium)SLC35F2 (select the gene name)
Genetic variants : HAPMAP54733
Genomic Variants (DGV)SLC35F2 [DGVbeta]
DECIPHER (Syndromes)11:107661717-107729914  ENSG00000110660
CONAN: Copy Number AnalysisSLC35F2 
Mutations
ICGC Data PortalSLC35F2 
TCGA Data PortalSLC35F2 
Broad Tumor PortalSLC35F2
OASIS PortalSLC35F2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC35F2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC35F2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC35F2
DgiDB (Drug Gene Interaction Database)SLC35F2
DoCM (Curated mutations)SLC35F2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC35F2 (select a term)
intoGenSLC35F2
Cancer3DSLC35F2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSLC35F2
Genetic Testing Registry SLC35F2
NextProtQ8IXU6 [Medical]
TSGene54733
GENETestsSLC35F2
Huge Navigator SLC35F2 [HugePedia]
snp3D : Map Gene to Disease54733
BioCentury BCIQSLC35F2
ClinGenSLC35F2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54733
Chemical/Pharm GKB GenePA134945023
Clinical trialSLC35F2
Miscellaneous
canSAR (ICR)SLC35F2 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC35F2
EVEXSLC35F2
GoPubMedSLC35F2
iHOPSLC35F2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:43:42 CET 2017

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