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SLC35F3 (solute carrier family 35 member F3)

Identity

Alias_namessolute carrier family 35, member F3
Alias_symbol (synonym)FLJ37712
Other alias-
HGNC (Hugo) SLC35F3
LocusID (NCBI) 148641
Atlas_Id 73411
Location 1q42.2  [Link to chromosome band 1q42]
Location_base_pair Starts at 234214211 and ends at 234324518 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RP11-35N6.1 () / SLC35F3 (1q42.2)SLC35F3 (1q42.2) / KXD1 (19p13.11)SLC35F3 (1q42.2) / RIT1 (1q22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC35F3   23616
Cards
Entrez_Gene (NCBI)SLC35F3  148641  solute carrier family 35 member F3
Aliases
GeneCards (Weizmann)SLC35F3
Ensembl hg19 (Hinxton)ENSG00000183780 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183780 [Gene_View]  chr1:234214211-234324518 [Contig_View]  SLC35F3 [Vega]
ICGC DataPortalENSG00000183780
TCGA cBioPortalSLC35F3
AceView (NCBI)SLC35F3
Genatlas (Paris)SLC35F3
WikiGenes148641
SOURCE (Princeton)SLC35F3
Genetics Home Reference (NIH)SLC35F3
Genomic and cartography
GoldenPath hg38 (UCSC)SLC35F3  -     chr1:234214211-234324518 +  1q42.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC35F3  -     1q42.2   [Description]    (hg19-Feb_2009)
EnsemblSLC35F3 - 1q42.2 [CytoView hg19]  SLC35F3 - 1q42.2 [CytoView hg38]
Mapping of homologs : NCBISLC35F3 [Mapview hg19]  SLC35F3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK095031 BC037878 DB468252 HY303761
RefSeq transcript (Entrez)NM_001300845 NM_173508
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC35F3
Cluster EST : UnigeneHs.158748 [ NCBI ]
CGAP (NCI)Hs.158748
Alternative Splicing GalleryENSG00000183780
Gene ExpressionSLC35F3 [ NCBI-GEO ]   SLC35F3 [ EBI - ARRAY_EXPRESS ]   SLC35F3 [ SEEK ]   SLC35F3 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC35F3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)148641
GTEX Portal (Tissue expression)SLC35F3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IY50   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IY50  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IY50
Splice isoforms : SwissVarQ8IY50
PhosPhoSitePlusQ8IY50
Domains : Interpro (EBI)EamA_dom    Solute_c_fam_35_mem_F3/F4   
Domain families : Pfam (Sanger)EamA (PF00892)   
Domain families : Pfam (NCBI)pfam00892   
Conserved Domain (NCBI)SLC35F3
DMDM Disease mutations148641
Blocks (Seattle)SLC35F3
SuperfamilyQ8IY50
Human Protein AtlasENSG00000183780
Peptide AtlasQ8IY50
HPRD15378
IPIIPI00395585   IPI00167687   
Protein Interaction databases
DIP (DOE-UCLA)Q8IY50
IntAct (EBI)Q8IY50
FunCoupENSG00000183780
BioGRIDSLC35F3
STRING (EMBL)SLC35F3
ZODIACSLC35F3
Ontologies - Pathways
QuickGOQ8IY50
Ontology : AmiGOthiamine transport  integral component of membrane  
Ontology : EGO-EBIthiamine transport  integral component of membrane  
NDEx NetworkSLC35F3
Atlas of Cancer Signalling NetworkSLC35F3
Wikipedia pathwaysSLC35F3
Orthology - Evolution
OrthoDB148641
GeneTree (enSembl)ENSG00000183780
Phylogenetic Trees/Animal Genes : TreeFamSLC35F3
HOVERGENQ8IY50
HOGENOMQ8IY50
Homologs : HomoloGeneSLC35F3
Homology/Alignments : Family Browser (UCSC)SLC35F3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC35F3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC35F3
dbVarSLC35F3
ClinVarSLC35F3
1000_GenomesSLC35F3 
Exome Variant ServerSLC35F3
ExAC (Exome Aggregation Consortium)SLC35F3 (select the gene name)
Genetic variants : HAPMAP148641
Genomic Variants (DGV)SLC35F3 [DGVbeta]
DECIPHERSLC35F3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC35F3 
Mutations
ICGC Data PortalSLC35F3 
TCGA Data PortalSLC35F3 
Broad Tumor PortalSLC35F3
OASIS PortalSLC35F3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC35F3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC35F3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC35F3
DgiDB (Drug Gene Interaction Database)SLC35F3
DoCM (Curated mutations)SLC35F3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC35F3 (select a term)
intoGenSLC35F3
Cancer3DSLC35F3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSLC35F3
Genetic Testing Registry SLC35F3
NextProtQ8IY50 [Medical]
TSGene148641
GENETestsSLC35F3
Target ValidationSLC35F3
Huge Navigator SLC35F3 [HugePedia]
snp3D : Map Gene to Disease148641
BioCentury BCIQSLC35F3
ClinGenSLC35F3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD148641
Chemical/Pharm GKB GenePA134938022
Clinical trialSLC35F3
Miscellaneous
canSAR (ICR)SLC35F3 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC35F3
EVEXSLC35F3
GoPubMedSLC35F3
iHOPSLC35F3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:38:10 CEST 2017

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