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SLC35F4 (solute carrier family 35 member F4)

Identity

Alias_namesC14orf36
chromosome 14 open reading frame 36
solute carrier family 35, member F4
Alias_symbol (synonym)FLJ37712
Other aliasc14_5373
HGNC (Hugo) SLC35F4
LocusID (NCBI) 341880
Atlas_Id 73412
Location 14q22.3  [Link to chromosome band 14q22]
Location_base_pair Starts at 57563922 and ends at 57865874 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EXOC5 (14q22.3) / SLC35F4 (14q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC35F4   19845
Cards
Entrez_Gene (NCBI)SLC35F4  341880  solute carrier family 35 member F4
AliasesC14orf36; c14_5373
GeneCards (Weizmann)SLC35F4
Ensembl hg19 (Hinxton)ENSG00000151812 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151812 [Gene_View]  chr14:57563922-57865874 [Contig_View]  SLC35F4 [Vega]
ICGC DataPortalENSG00000151812
TCGA cBioPortalSLC35F4
AceView (NCBI)SLC35F4
Genatlas (Paris)SLC35F4
WikiGenes341880
SOURCE (Princeton)SLC35F4
Genetics Home Reference (NIH)SLC35F4
Genomic and cartography
GoldenPath hg38 (UCSC)SLC35F4  -     chr14:57563922-57865874 -  14q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC35F4  -     14q22.3   [Description]    (hg19-Feb_2009)
EnsemblSLC35F4 - 14q22.3 [CytoView hg19]  SLC35F4 - 14q22.3 [CytoView hg38]
Mapping of homologs : NCBISLC35F4 [Mapview hg19]  SLC35F4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC101318 BC101319 BC101320 BC101321 BX107164
RefSeq transcript (Entrez)NM_001080455 NM_001206920 NM_001306087
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC35F4
Cluster EST : UnigeneHs.28280 [ NCBI ]
CGAP (NCI)Hs.28280
Alternative Splicing GalleryENSG00000151812
Gene ExpressionSLC35F4 [ NCBI-GEO ]   SLC35F4 [ EBI - ARRAY_EXPRESS ]   SLC35F4 [ SEEK ]   SLC35F4 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC35F4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)341880
GTEX Portal (Tissue expression)SLC35F4
Protein : pattern, domain, 3D structure
UniProt/SwissProtA4IF30   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA4IF30  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA4IF30
Splice isoforms : SwissVarA4IF30
PhosPhoSitePlusA4IF30
Domains : Interpro (EBI)SLC35_F1/F2/F6    Solute_c_fam_35_mem_F3/F4   
Domain families : Pfam (Sanger)SLC35F (PF06027)   
Domain families : Pfam (NCBI)pfam06027   
Conserved Domain (NCBI)SLC35F4
DMDM Disease mutations341880
Blocks (Seattle)SLC35F4
SuperfamilyA4IF30
Human Protein AtlasENSG00000151812
Peptide AtlasA4IF30
IPIIPI00845268   IPI00876988   IPI01026027   IPI01024836   IPI01026005   
Protein Interaction databases
DIP (DOE-UCLA)A4IF30
IntAct (EBI)A4IF30
FunCoupENSG00000151812
BioGRIDSLC35F4
STRING (EMBL)SLC35F4
ZODIACSLC35F4
Ontologies - Pathways
QuickGOA4IF30
Ontology : AmiGOtransport  integral component of membrane  
Ontology : EGO-EBItransport  integral component of membrane  
NDEx NetworkSLC35F4
Atlas of Cancer Signalling NetworkSLC35F4
Wikipedia pathwaysSLC35F4
Orthology - Evolution
OrthoDB341880
GeneTree (enSembl)ENSG00000151812
Phylogenetic Trees/Animal Genes : TreeFamSLC35F4
HOVERGENA4IF30
HOGENOMA4IF30
Homologs : HomoloGeneSLC35F4
Homology/Alignments : Family Browser (UCSC)SLC35F4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC35F4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC35F4
dbVarSLC35F4
ClinVarSLC35F4
1000_GenomesSLC35F4 
Exome Variant ServerSLC35F4
ExAC (Exome Aggregation Consortium)SLC35F4 (select the gene name)
Genetic variants : HAPMAP341880
Genomic Variants (DGV)SLC35F4 [DGVbeta]
DECIPHERSLC35F4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC35F4 
Mutations
ICGC Data PortalSLC35F4 
TCGA Data PortalSLC35F4 
Broad Tumor PortalSLC35F4
OASIS PortalSLC35F4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC35F4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC35F4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC35F4
DgiDB (Drug Gene Interaction Database)SLC35F4
DoCM (Curated mutations)SLC35F4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC35F4 (select a term)
intoGenSLC35F4
Cancer3DSLC35F4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSLC35F4
Genetic Testing Registry SLC35F4
NextProtA4IF30 [Medical]
TSGene341880
GENETestsSLC35F4
Target ValidationSLC35F4
Huge Navigator SLC35F4 [HugePedia]
snp3D : Map Gene to Disease341880
BioCentury BCIQSLC35F4
ClinGenSLC35F4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD341880
Chemical/Pharm GKB GenePA134959551
Clinical trialSLC35F4
Miscellaneous
canSAR (ICR)SLC35F4 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC35F4
EVEXSLC35F4
GoPubMedSLC35F4
iHOPSLC35F4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:41:16 CEST 2017

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