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SLC35F5 (solute carrier family 35 member F5)

Identity

Alias_namessolute carrier family 35, member F5
Alias_symbol (synonym)FLJ22004
Other alias-
HGNC (Hugo) SLC35F5
LocusID (NCBI) 80255
Atlas_Id 73413
Location 2q14.1  [Link to chromosome band 2q14]
Location_base_pair Starts at 113706721 and ends at 113756693 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LIMA1 (12q13.12) / SLC35F5 (2q14.1)SLC35F5 (2q14.1) / SLC35F5 (2q14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC35F5   23617
Cards
Entrez_Gene (NCBI)SLC35F5  80255  solute carrier family 35 member F5
Aliases
GeneCards (Weizmann)SLC35F5
Ensembl hg19 (Hinxton)ENSG00000115084 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000115084 [Gene_View]  chr2:113706721-113756693 [Contig_View]  SLC35F5 [Vega]
ICGC DataPortalENSG00000115084
TCGA cBioPortalSLC35F5
AceView (NCBI)SLC35F5
Genatlas (Paris)SLC35F5
WikiGenes80255
SOURCE (Princeton)SLC35F5
Genetics Home Reference (NIH)SLC35F5
Genomic and cartography
GoldenPath hg38 (UCSC)SLC35F5  -     chr2:113706721-113756693 -  2q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC35F5  -     2q14.1   [Description]    (hg19-Feb_2009)
EnsemblSLC35F5 - 2q14.1 [CytoView hg19]  SLC35F5 - 2q14.1 [CytoView hg38]
Mapping of homologs : NCBISLC35F5 [Mapview hg19]  SLC35F5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF529364 AK024666 AK025657 AK093903 AK315719
RefSeq transcript (Entrez)NM_001330314 NM_001330315 NM_001330316 NM_001330317 NM_025181
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC35F5
Cluster EST : UnigeneHs.632527 [ NCBI ]
CGAP (NCI)Hs.632527
Alternative Splicing GalleryENSG00000115084
Gene ExpressionSLC35F5 [ NCBI-GEO ]   SLC35F5 [ EBI - ARRAY_EXPRESS ]   SLC35F5 [ SEEK ]   SLC35F5 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC35F5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80255
GTEX Portal (Tissue expression)SLC35F5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WV83   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WV83  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WV83
Splice isoforms : SwissVarQ8WV83
PhosPhoSitePlusQ8WV83
Domains : Interpro (EBI)EamA_dom   
Domain families : Pfam (Sanger)EamA (PF00892)   
Domain families : Pfam (NCBI)pfam00892   
Conserved Domain (NCBI)SLC35F5
DMDM Disease mutations80255
Blocks (Seattle)SLC35F5
SuperfamilyQ8WV83
Human Protein AtlasENSG00000115084
Peptide AtlasQ8WV83
HPRD11579
IPIIPI00103055   IPI00915996   IPI00877075   IPI00917416   IPI00916372   
Protein Interaction databases
DIP (DOE-UCLA)Q8WV83
IntAct (EBI)Q8WV83
FunCoupENSG00000115084
BioGRIDSLC35F5
STRING (EMBL)SLC35F5
ZODIACSLC35F5
Ontologies - Pathways
QuickGOQ8WV83
Ontology : AmiGOtransport  integral component of membrane  
Ontology : EGO-EBItransport  integral component of membrane  
NDEx NetworkSLC35F5
Atlas of Cancer Signalling NetworkSLC35F5
Wikipedia pathwaysSLC35F5
Orthology - Evolution
OrthoDB80255
GeneTree (enSembl)ENSG00000115084
Phylogenetic Trees/Animal Genes : TreeFamSLC35F5
HOVERGENQ8WV83
HOGENOMQ8WV83
Homologs : HomoloGeneSLC35F5
Homology/Alignments : Family Browser (UCSC)SLC35F5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC35F5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC35F5
dbVarSLC35F5
ClinVarSLC35F5
1000_GenomesSLC35F5 
Exome Variant ServerSLC35F5
ExAC (Exome Aggregation Consortium)SLC35F5 (select the gene name)
Genetic variants : HAPMAP80255
Genomic Variants (DGV)SLC35F5 [DGVbeta]
DECIPHERSLC35F5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC35F5 
Mutations
ICGC Data PortalSLC35F5 
TCGA Data PortalSLC35F5 
Broad Tumor PortalSLC35F5
OASIS PortalSLC35F5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC35F5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC35F5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC35F5
DgiDB (Drug Gene Interaction Database)SLC35F5
DoCM (Curated mutations)SLC35F5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC35F5 (select a term)
intoGenSLC35F5
Cancer3DSLC35F5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSLC35F5
Genetic Testing Registry SLC35F5
NextProtQ8WV83 [Medical]
TSGene80255
GENETestsSLC35F5
Target ValidationSLC35F5
Huge Navigator SLC35F5 [HugePedia]
snp3D : Map Gene to Disease80255
BioCentury BCIQSLC35F5
ClinGenSLC35F5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80255
Chemical/Pharm GKB GenePA134953009
Clinical trialSLC35F5
Miscellaneous
canSAR (ICR)SLC35F5 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC35F5
EVEXSLC35F5
GoPubMedSLC35F5
iHOPSLC35F5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:41:16 CEST 2017

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