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SLC35F6 (solute carrier family 35 member F6)

Identity

Alias_namesC2orf18
chromosome 2 open reading frame 18
solute carrier family 35, member F6
Alias_symbol (synonym)FLJ20555
ANT2BP
TANGO9
Other alias
HGNC (Hugo) SLC35F6
LocusID (NCBI) 54978
Atlas_Id 50845
Location 2p23.3  [Link to chromosome band 2p23]
Location_base_pair Starts at 26764274 and ends at 26781231 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC35F6   26055
Cards
Entrez_Gene (NCBI)SLC35F6  54978  solute carrier family 35 member F6
AliasesANT2BP; C2orf18; TANGO9
GeneCards (Weizmann)SLC35F6
Ensembl hg19 (Hinxton)ENSG00000213699 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213699 [Gene_View]  chr2:26764274-26781231 [Contig_View]  SLC35F6 [Vega]
ICGC DataPortalENSG00000213699
TCGA cBioPortalSLC35F6
AceView (NCBI)SLC35F6
Genatlas (Paris)SLC35F6
WikiGenes54978
SOURCE (Princeton)SLC35F6
Genetics Home Reference (NIH)SLC35F6
Genomic and cartography
GoldenPath hg38 (UCSC)SLC35F6  -     chr2:26764274-26781231 +  2p23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC35F6  -     2p23.3   [Description]    (hg19-Feb_2009)
EnsemblSLC35F6 - 2p23.3 [CytoView hg19]  SLC35F6 - 2p23.3 [CytoView hg38]
Mapping of homologs : NCBISLC35F6 [Mapview hg19]  SLC35F6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000562 AK025889 AK075164 AK222929 AK296996
RefSeq transcript (Entrez)NM_017877
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC35F6
Cluster EST : UnigeneHs.516034 [ NCBI ]
CGAP (NCI)Hs.516034
Alternative Splicing GalleryENSG00000213699
Gene ExpressionSLC35F6 [ NCBI-GEO ]   SLC35F6 [ EBI - ARRAY_EXPRESS ]   SLC35F6 [ SEEK ]   SLC35F6 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC35F6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54978
GTEX Portal (Tissue expression)SLC35F6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N357   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N357  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N357
Splice isoforms : SwissVarQ8N357
PhosPhoSitePlusQ8N357
Domains : Interpro (EBI)SLC35_F1/F2/F6    UCP036436   
Domain families : Pfam (Sanger)SLC35F (PF06027)   
Domain families : Pfam (NCBI)pfam06027   
Conserved Domain (NCBI)SLC35F6
DMDM Disease mutations54978
Blocks (Seattle)SLC35F6
SuperfamilyQ8N357
Human Protein AtlasENSG00000213699
Peptide AtlasQ8N357
HPRD12808
IPIIPI00550440   IPI00908962   IPI00909361   IPI00894080   IPI00892923   
Protein Interaction databases
DIP (DOE-UCLA)Q8N357
IntAct (EBI)Q8N357
FunCoupENSG00000213699
BioGRIDSLC35F6
STRING (EMBL)SLC35F6
ZODIACSLC35F6
Ontologies - Pathways
QuickGOQ8N357
Ontology : AmiGOprotein binding  nucleoplasm  mitochondrion  lysosome  lysosomal membrane  cytosol  positive regulation of cell proliferation  integral component of membrane  intracellular membrane-bounded organelle  extracellular exosome  negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway  
Ontology : EGO-EBIprotein binding  nucleoplasm  mitochondrion  lysosome  lysosomal membrane  cytosol  positive regulation of cell proliferation  integral component of membrane  intracellular membrane-bounded organelle  extracellular exosome  negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway  
NDEx NetworkSLC35F6
Atlas of Cancer Signalling NetworkSLC35F6
Wikipedia pathwaysSLC35F6
Orthology - Evolution
OrthoDB54978
GeneTree (enSembl)ENSG00000213699
Phylogenetic Trees/Animal Genes : TreeFamSLC35F6
HOVERGENQ8N357
HOGENOMQ8N357
Homologs : HomoloGeneSLC35F6
Homology/Alignments : Family Browser (UCSC)SLC35F6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC35F6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC35F6
dbVarSLC35F6
ClinVarSLC35F6
1000_GenomesSLC35F6 
Exome Variant ServerSLC35F6
ExAC (Exome Aggregation Consortium)SLC35F6 (select the gene name)
Genetic variants : HAPMAP54978
Genomic Variants (DGV)SLC35F6 [DGVbeta]
DECIPHERSLC35F6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC35F6 
Mutations
ICGC Data PortalSLC35F6 
TCGA Data PortalSLC35F6 
Broad Tumor PortalSLC35F6
OASIS PortalSLC35F6 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSLC35F6
BioMutasearch SLC35F6
DgiDB (Drug Gene Interaction Database)SLC35F6
DoCM (Curated mutations)SLC35F6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC35F6 (select a term)
intoGenSLC35F6
Cancer3DSLC35F6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSLC35F6
Genetic Testing Registry SLC35F6
NextProtQ8N357 [Medical]
TSGene54978
GENETestsSLC35F6
Target ValidationSLC35F6
Huge Navigator SLC35F6 [HugePedia]
snp3D : Map Gene to Disease54978
BioCentury BCIQSLC35F6
ClinGenSLC35F6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54978
Chemical/Pharm GKB GenePA134913368
Clinical trialSLC35F6
Miscellaneous
canSAR (ICR)SLC35F6 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC35F6
EVEXSLC35F6
GoPubMedSLC35F6
iHOPSLC35F6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:56:06 CEST 2017

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