Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SLC35G1 (solute carrier family 35 member G1)

Identity

Alias_namesTMEM20
transmembrane protein 20
solute carrier family 35, member G1
Alias_symbol (synonym)FLJ33990
C10orf60
Other aliasPOST
HGNC (Hugo) SLC35G1
LocusID (NCBI) 159371
Atlas_Id 73414
Location 10q23.33  [Link to chromosome band 10q23]
Location_base_pair Starts at 93893970 and ends at 93903824 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC35G1   26607
Cards
Entrez_Gene (NCBI)SLC35G1  159371  solute carrier family 35 member G1
AliasesC10orf60; POST; TMEM20
GeneCards (Weizmann)SLC35G1
Ensembl hg19 (Hinxton)ENSG00000176273 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176273 [Gene_View]  chr10:93893970-93903824 [Contig_View]  SLC35G1 [Vega]
ICGC DataPortalENSG00000176273
TCGA cBioPortalSLC35G1
AceView (NCBI)SLC35G1
Genatlas (Paris)SLC35G1
WikiGenes159371
SOURCE (Princeton)SLC35G1
Genetics Home Reference (NIH)SLC35G1
Genomic and cartography
GoldenPath hg38 (UCSC)SLC35G1  -     chr10:93893970-93903824 +  10q23.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC35G1  -     10q23.33   [Description]    (hg19-Feb_2009)
EnsemblSLC35G1 - 10q23.33 [CytoView hg19]  SLC35G1 - 10q23.33 [CytoView hg38]
Mapping of homologs : NCBISLC35G1 [Mapview hg19]  SLC35G1 [Mapview hg38]
OMIM617167   
Gene and transcription
Genbank (Entrez)AK091309 BC036382 BC041432 BC047102 BC058549
RefSeq transcript (Entrez)NM_001134658 NM_001345993 NM_153226
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC35G1
Cluster EST : UnigeneHs.744369 [ NCBI ]
CGAP (NCI)Hs.744369
Alternative Splicing GalleryENSG00000176273
Gene ExpressionSLC35G1 [ NCBI-GEO ]   SLC35G1 [ EBI - ARRAY_EXPRESS ]   SLC35G1 [ SEEK ]   SLC35G1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC35G1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)159371
GTEX Portal (Tissue expression)SLC35G1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2M3R5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2M3R5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2M3R5
Splice isoforms : SwissVarQ2M3R5
PhosPhoSitePlusQ2M3R5
Domains : Interpro (EBI)EamA_dom   
Domain families : Pfam (Sanger)EamA (PF00892)   
Domain families : Pfam (NCBI)pfam00892   
Conserved Domain (NCBI)SLC35G1
DMDM Disease mutations159371
Blocks (Seattle)SLC35G1
SuperfamilyQ2M3R5
Human Protein AtlasENSG00000176273
Peptide AtlasQ2M3R5
HPRD15531
IPIIPI00760670   IPI00414020   
Protein Interaction databases
DIP (DOE-UCLA)Q2M3R5
IntAct (EBI)Q2M3R5
FunCoupENSG00000176273
BioGRIDSLC35G1
STRING (EMBL)SLC35G1
ZODIACSLC35G1
Ontologies - Pathways
QuickGOQ2M3R5
Ontology : AmiGOprotein binding  endoplasmic reticulum membrane  plasma membrane  integral component of membrane  regulation of cytosolic calcium ion concentration  calcium ion export from cell  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum membrane  plasma membrane  integral component of membrane  regulation of cytosolic calcium ion concentration  calcium ion export from cell  
NDEx NetworkSLC35G1
Atlas of Cancer Signalling NetworkSLC35G1
Wikipedia pathwaysSLC35G1
Orthology - Evolution
OrthoDB159371
GeneTree (enSembl)ENSG00000176273
Phylogenetic Trees/Animal Genes : TreeFamSLC35G1
HOVERGENQ2M3R5
HOGENOMQ2M3R5
Homologs : HomoloGeneSLC35G1
Homology/Alignments : Family Browser (UCSC)SLC35G1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC35G1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC35G1
dbVarSLC35G1
ClinVarSLC35G1
1000_GenomesSLC35G1 
Exome Variant ServerSLC35G1
ExAC (Exome Aggregation Consortium)SLC35G1 (select the gene name)
Genetic variants : HAPMAP159371
Genomic Variants (DGV)SLC35G1 [DGVbeta]
DECIPHERSLC35G1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC35G1 
Mutations
ICGC Data PortalSLC35G1 
TCGA Data PortalSLC35G1 
Broad Tumor PortalSLC35G1
OASIS PortalSLC35G1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSLC35G1
BioMutasearch SLC35G1
DgiDB (Drug Gene Interaction Database)SLC35G1
DoCM (Curated mutations)SLC35G1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC35G1 (select a term)
intoGenSLC35G1
Cancer3DSLC35G1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617167   
Orphanet
MedgenSLC35G1
Genetic Testing Registry SLC35G1
NextProtQ2M3R5 [Medical]
TSGene159371
GENETestsSLC35G1
Target ValidationSLC35G1
Huge Navigator SLC35G1 [HugePedia]
snp3D : Map Gene to Disease159371
BioCentury BCIQSLC35G1
ClinGenSLC35G1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD159371
Chemical/Pharm GKB GenePA134933626
Clinical trialSLC35G1
Miscellaneous
canSAR (ICR)SLC35G1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC35G1
EVEXSLC35G1
GoPubMedSLC35G1
iHOPSLC35G1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:41:16 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.