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SLC35G2 (solute carrier family 35 member G2)

Identity

Alias_namesTMEM22
transmembrane protein 22
solute carrier family 35, member G2
Alias_symbol (synonym)MGC3295
DKFZp564K2464
Other alias
HGNC (Hugo) SLC35G2
LocusID (NCBI) 80723
Atlas_Id 50839
Location 3q22.3  [Link to chromosome band 3q22]
Location_base_pair Starts at 136819019 and ends at 136855892 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RTN4R (22q11.21) / SLC35G2 (3q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC35G2   28480
Cards
Entrez_Gene (NCBI)SLC35G2  80723  solute carrier family 35 member G2
AliasesTMEM22
GeneCards (Weizmann)SLC35G2
Ensembl hg19 (Hinxton)ENSG00000168917 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168917 [Gene_View]  chr3:136819019-136855892 [Contig_View]  SLC35G2 [Vega]
ICGC DataPortalENSG00000168917
TCGA cBioPortalSLC35G2
AceView (NCBI)SLC35G2
Genatlas (Paris)SLC35G2
WikiGenes80723
SOURCE (Princeton)SLC35G2
Genetics Home Reference (NIH)SLC35G2
Genomic and cartography
GoldenPath hg38 (UCSC)SLC35G2  -     chr3:136819019-136855892 +  3q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC35G2  -     3q22.3   [Description]    (hg19-Feb_2009)
EnsemblSLC35G2 - 3q22.3 [CytoView hg19]  SLC35G2 - 3q22.3 [CytoView hg38]
Mapping of homologs : NCBISLC35G2 [Mapview hg19]  SLC35G2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK096029 AK314079 AL136661 AM392938 AM393374
RefSeq transcript (Entrez)NM_001097599 NM_001097600 NM_025246
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC35G2
Cluster EST : UnigeneHs.655019 [ NCBI ]
CGAP (NCI)Hs.655019
Alternative Splicing GalleryENSG00000168917
Gene ExpressionSLC35G2 [ NCBI-GEO ]   SLC35G2 [ EBI - ARRAY_EXPRESS ]   SLC35G2 [ SEEK ]   SLC35G2 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC35G2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80723
GTEX Portal (Tissue expression)SLC35G2
Human Protein AtlasENSG00000168917-SLC35G2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TBE7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TBE7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TBE7
Splice isoforms : SwissVarQ8TBE7
PhosPhoSitePlusQ8TBE7
Domains : Interpro (EBI)EamA_dom   
Domain families : Pfam (Sanger)EamA (PF00892)   
Domain families : Pfam (NCBI)pfam00892   
Conserved Domain (NCBI)SLC35G2
DMDM Disease mutations80723
Blocks (Seattle)SLC35G2
SuperfamilyQ8TBE7
Human Protein Atlas [tissue]ENSG00000168917-SLC35G2 [tissue]
Peptide AtlasQ8TBE7
HPRD15532
IPIIPI00160418   
Protein Interaction databases
DIP (DOE-UCLA)Q8TBE7
IntAct (EBI)Q8TBE7
FunCoupENSG00000168917
BioGRIDSLC35G2
STRING (EMBL)SLC35G2
ZODIACSLC35G2
Ontologies - Pathways
QuickGOQ8TBE7
Ontology : AmiGOGolgi apparatus  plasma membrane  integral component of plasma membrane  
Ontology : EGO-EBIGolgi apparatus  plasma membrane  integral component of plasma membrane  
NDEx NetworkSLC35G2
Atlas of Cancer Signalling NetworkSLC35G2
Wikipedia pathwaysSLC35G2
Orthology - Evolution
OrthoDB80723
GeneTree (enSembl)ENSG00000168917
Phylogenetic Trees/Animal Genes : TreeFamSLC35G2
HOVERGENQ8TBE7
HOGENOMQ8TBE7
Homologs : HomoloGeneSLC35G2
Homology/Alignments : Family Browser (UCSC)SLC35G2
Gene fusions - Rearrangements
Fusion : MitelmanRTN4R/SLC35G2 [22q11.21/3q22.3]  [t(3;22)(q22;q11)]  
Tumor Fusion PortalSLC35G2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC35G2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC35G2
dbVarSLC35G2
ClinVarSLC35G2
1000_GenomesSLC35G2 
Exome Variant ServerSLC35G2
ExAC (Exome Aggregation Consortium)ENSG00000168917
GNOMAD BrowserENSG00000168917
Genetic variants : HAPMAP80723
Genomic Variants (DGV)SLC35G2 [DGVbeta]
DECIPHERSLC35G2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC35G2 
Mutations
ICGC Data PortalSLC35G2 
TCGA Data PortalSLC35G2 
Broad Tumor PortalSLC35G2
OASIS PortalSLC35G2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSLC35G2
BioMutasearch SLC35G2
DgiDB (Drug Gene Interaction Database)SLC35G2
DoCM (Curated mutations)SLC35G2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC35G2 (select a term)
intoGenSLC35G2
Cancer3DSLC35G2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSLC35G2
MedgenSLC35G2
Genetic Testing Registry SLC35G2
NextProtQ8TBE7 [Medical]
TSGene80723
GENETestsSLC35G2
Target ValidationSLC35G2
Huge Navigator SLC35G2 [HugePedia]
snp3D : Map Gene to Disease80723
BioCentury BCIQSLC35G2
ClinGenSLC35G2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80723
Chemical/Pharm GKB GenePA134946375
Clinical trialSLC35G2
Miscellaneous
canSAR (ICR)SLC35G2 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC35G2
EVEXSLC35G2
GoPubMedSLC35G2
iHOPSLC35G2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:35:11 CET 2017

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