Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC35G3 (solute carrier family 35 member G3)

Identity

Alias (NCBI)AMAC1
TMEM21A
HGNC (Hugo) SLC35G3
HGNC Alias symbFLJ40154
HGNC Previous nameTMEM21A
 AMAC1
HGNC Previous nametransmembrane protein 21A
 acyl-malonyl condensing enzyme 1
 solute carrier family 35, member G3
LocusID (NCBI) 146861
Atlas_Id 73415
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 35192520 and ends at 35194393 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SLC35G3   26848
Cards
Entrez_Gene (NCBI)SLC35G3    solute carrier family 35 member G3
AliasesAMAC1; TMEM21A
GeneCards (Weizmann)SLC35G3
Ensembl hg19 (Hinxton)ENSG00000164729 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164729 [Gene_View]  ENSG00000164729 [Sequence]  chr17:35192520-35194393 [Contig_View]  SLC35G3 [Vega]
ICGC DataPortalENSG00000164729
TCGA cBioPortalSLC35G3
AceView (NCBI)SLC35G3
Genatlas (Paris)SLC35G3
SOURCE (Princeton)SLC35G3
Genetics Home Reference (NIH)SLC35G3
Genomic and cartography
GoldenPath hg38 (UCSC)SLC35G3  -     chr17:35192520-35194393 -  17q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC35G3  -     17q12   [Description]    (hg19-Feb_2009)
GoldenPathSLC35G3 - 17q12 [CytoView hg19]  SLC35G3 - 17q12 [CytoView hg38]
ImmunoBaseENSG00000164729
Genome Data Viewer NCBISLC35G3 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK097473 BC136422 BC140700
RefSeq transcript (Entrez)NM_152462
Consensus coding sequences : CCDS (NCBI)SLC35G3
Gene ExpressionSLC35G3 [ NCBI-GEO ]   SLC35G3 [ EBI - ARRAY_EXPRESS ]   SLC35G3 [ SEEK ]   SLC35G3 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC35G3 [ Firebrowse - Broad ]
GenevisibleExpression of SLC35G3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)146861
GTEX Portal (Tissue expression)SLC35G3
Human Protein AtlasENSG00000164729-SLC35G3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N808   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N808  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N808
PhosPhoSitePlusQ8N808
Domains : Interpro (EBI)EamA_dom   
Domain families : Pfam (Sanger)EamA (PF00892)   
Domain families : Pfam (NCBI)pfam00892   
Conserved Domain (NCBI)SLC35G3
SuperfamilyQ8N808
AlphaFold pdb e-kbQ8N808   
Human Protein Atlas [tissue]ENSG00000164729-SLC35G3 [tissue]
HPRD12450
Protein Interaction databases
DIP (DOE-UCLA)Q8N808
IntAct (EBI)Q8N808
BioGRIDSLC35G3
STRING (EMBL)SLC35G3
ZODIACSLC35G3
Ontologies - Pathways
QuickGOQ8N808
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkSLC35G3
Atlas of Cancer Signalling NetworkSLC35G3
Wikipedia pathwaysSLC35G3
Orthology - Evolution
OrthoDB146861
GeneTree (enSembl)ENSG00000164729
Phylogenetic Trees/Animal Genes : TreeFamSLC35G3
Homologs : HomoloGeneSLC35G3
Homology/Alignments : Family Browser (UCSC)SLC35G3
Gene fusions - Rearrangements
Fusion : QuiverSLC35G3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC35G3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC35G3
dbVarSLC35G3
ClinVarSLC35G3
MonarchSLC35G3
1000_GenomesSLC35G3 
Exome Variant ServerSLC35G3
GNOMAD BrowserENSG00000164729
Varsome BrowserSLC35G3
ACMGSLC35G3 variants
VarityQ8N808
Genomic Variants (DGV)SLC35G3 [DGVbeta]
DECIPHERSLC35G3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC35G3 
Mutations
ICGC Data PortalSLC35G3 
TCGA Data PortalSLC35G3 
Broad Tumor PortalSLC35G3
OASIS PortalSLC35G3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC35G3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSLC35G3
Mutations and Diseases : HGMDSLC35G3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSLC35G3
DgiDB (Drug Gene Interaction Database)SLC35G3
DoCM (Curated mutations)SLC35G3
CIViC (Clinical Interpretations of Variants in Cancer)SLC35G3
Cancer3DSLC35G3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSLC35G3
MedgenSLC35G3
Genetic Testing Registry SLC35G3
NextProtQ8N808 [Medical]
GENETestsSLC35G3
Target ValidationSLC35G3
Huge Navigator SLC35G3 [HugePedia]
ClinGenSLC35G3
Clinical trials, drugs, therapy
MyCancerGenomeSLC35G3
Protein Interactions : CTDSLC35G3
Pharm GKB GenePA134902447
PharosQ8N808
Clinical trialSLC35G3
Miscellaneous
canSAR (ICR)SLC35G3
HarmonizomeSLC35G3
DataMed IndexSLC35G3
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSLC35G3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:21:01 CEST 2021

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