Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SLC35G4 (solute carrier family 35 member G4)

Identity

Alias_namesAMAC1L1
SLC35G4P
acyl-malonyl condensing enzyme 1-like 1
solute carrier family 35, member G4, pseudogene
solute carrier family 35, member G4
Other alias
HGNC (Hugo) SLC35G4
LocusID (NCBI) 646000
Atlas_Id 73416
Location 18p11.21  [Link to chromosome band 18p11]
Location_base_pair Starts at 11609558 and ends at 11610612 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC35G4   31043
Cards
Entrez_Gene (NCBI)SLC35G4  646000  solute carrier family 35 member G4
AliasesAMAC1L1; SLC35G4P
GeneCards (Weizmann)SLC35G4
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr18:11609558-11610612 [Contig_View]  SLC35G4 [Vega]
TCGA cBioPortalSLC35G4
AceView (NCBI)SLC35G4
Genatlas (Paris)SLC35G4
WikiGenes646000
SOURCE (Princeton)SLC35G4
Genetics Home Reference (NIH)SLC35G4
Genomic and cartography
GoldenPath hg38 (UCSC)SLC35G4  -     chr18:11609558-11610612 +  18p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC35G4  -     18p11.21   [Description]    (hg19-Feb_2009)
EnsemblSLC35G4 - 18p11.21 [CytoView hg19]  SLC35G4 - 18p11.21 [CytoView hg38]
Mapping of homologs : NCBISLC35G4 [Mapview hg19]  SLC35G4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001282300
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC35G4
Gene ExpressionSLC35G4 [ NCBI-GEO ]   SLC35G4 [ EBI - ARRAY_EXPRESS ]   SLC35G4 [ SEEK ]   SLC35G4 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC35G4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)646000
GTEX Portal (Tissue expression)SLC35G4
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C7Q5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C7Q5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C7Q5
Splice isoforms : SwissVarP0C7Q5
PhosPhoSitePlusP0C7Q5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SLC35G4
DMDM Disease mutations646000
Blocks (Seattle)SLC35G4
SuperfamilyP0C7Q5
Peptide AtlasP0C7Q5
IPIIPI00141042   IPI00886977   
Protein Interaction databases
DIP (DOE-UCLA)P0C7Q5
IntAct (EBI)P0C7Q5
BioGRIDSLC35G4
STRING (EMBL)SLC35G4
ZODIACSLC35G4
Ontologies - Pathways
QuickGOP0C7Q5
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkSLC35G4
Atlas of Cancer Signalling NetworkSLC35G4
Wikipedia pathwaysSLC35G4
Orthology - Evolution
OrthoDB646000
Phylogenetic Trees/Animal Genes : TreeFamSLC35G4
HOVERGENP0C7Q5
HOGENOMP0C7Q5
Homologs : HomoloGeneSLC35G4
Homology/Alignments : Family Browser (UCSC)SLC35G4
Gene fusions - Rearrangements
Fusion: Tumor Portal SLC35G4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC35G4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC35G4
dbVarSLC35G4
ClinVarSLC35G4
1000_GenomesSLC35G4 
Exome Variant ServerSLC35G4
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP646000
Genomic Variants (DGV)SLC35G4 [DGVbeta]
DECIPHERSLC35G4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC35G4 
Mutations
ICGC Data PortalSLC35G4 
TCGA Data PortalSLC35G4 
Broad Tumor PortalSLC35G4
OASIS PortalSLC35G4 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSLC35G4
BioMutasearch SLC35G4
DgiDB (Drug Gene Interaction Database)SLC35G4
DoCM (Curated mutations)SLC35G4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC35G4 (select a term)
intoGenSLC35G4
Cancer3DSLC35G4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSLC35G4
Genetic Testing Registry SLC35G4
NextProtP0C7Q5 [Medical]
TSGene646000
GENETestsSLC35G4
Target ValidationSLC35G4
Huge Navigator SLC35G4 [HugePedia]
snp3D : Map Gene to Disease646000
BioCentury BCIQSLC35G4
ClinGenSLC35G4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD646000
Chemical/Pharm GKB GenePA134875980
Clinical trialSLC35G4
Miscellaneous
canSAR (ICR)SLC35G4 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC35G4
EVEXSLC35G4
GoPubMedSLC35G4
iHOPSLC35G4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:27:37 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.