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SLC35G6 (solute carrier family 35 member G6)

Identity

Alias (NCBI)AMAC1L3
TMEM21B
HGNC (Hugo) SLC35G6
HGNC Previous nameTMEM21B
 AMAC1L3
HGNC Previous nametransmembrane protein 21B
 acyl-malonyl condensing enzyme 1-like 3
 solute carrier family 35, member G6
LocusID (NCBI) 643664
Atlas_Id 73418
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 7481402 and ends at 7483064 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MRPL39 (21q21.3) / SLC35G6 (17p13.1)SLC35G6 (17p13.1) / ALOX12 (17p13.1)SLC35G6 (17p13.1) / FBN3 (19p13.2)
SLC35G6 (17p13.1) / SLC16A13 (17p13.1)SLC35G6 ALOX12SLC35G6 SLC16A13
SLC35G6 FBN3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(17;19)(p13;p13) SLC35G6/FBN3
t(17;19)(p13;p13) SLC35G6/FBN3


External links

 

Nomenclature
HGNC (Hugo)SLC35G6   31351
Cards
Entrez_Gene (NCBI)SLC35G6    solute carrier family 35 member G6
AliasesAMAC1L3; TMEM21B
GeneCards (Weizmann)SLC35G6
Ensembl hg19 (Hinxton)ENSG00000259224 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000259224 [Gene_View]  ENSG00000259224 [Sequence]  chr17:7481402-7483064 [Contig_View]  SLC35G6 [Vega]
ICGC DataPortalENSG00000259224
TCGA cBioPortalSLC35G6
AceView (NCBI)SLC35G6
Genatlas (Paris)SLC35G6
SOURCE (Princeton)SLC35G6
Genetics Home Reference (NIH)SLC35G6
Genomic and cartography
GoldenPath hg38 (UCSC)SLC35G6  -     chr17:7481402-7483064 +  17p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC35G6  -     17p13.1   [Description]    (hg19-Feb_2009)
GoldenPathSLC35G6 - 17p13.1 [CytoView hg19]  SLC35G6 - 17p13.1 [CytoView hg38]
ImmunoBaseENSG00000259224
Genome Data Viewer NCBISLC35G6 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001102614
Consensus coding sequences : CCDS (NCBI)SLC35G6
Gene ExpressionSLC35G6 [ NCBI-GEO ]   SLC35G6 [ EBI - ARRAY_EXPRESS ]   SLC35G6 [ SEEK ]   SLC35G6 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC35G6 [ Firebrowse - Broad ]
GenevisibleExpression of SLC35G6 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)643664
GTEX Portal (Tissue expression)SLC35G6
Human Protein AtlasENSG00000259224-SLC35G6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C7Q6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C7Q6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C7Q6
PhosPhoSitePlusP0C7Q6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SLC35G6
SuperfamilyP0C7Q6
AlphaFold pdb e-kbP0C7Q6   
Human Protein Atlas [tissue]ENSG00000259224-SLC35G6 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)P0C7Q6
IntAct (EBI)P0C7Q6
BioGRIDSLC35G6
STRING (EMBL)SLC35G6
ZODIACSLC35G6
Ontologies - Pathways
QuickGOP0C7Q6
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkSLC35G6
Atlas of Cancer Signalling NetworkSLC35G6
Wikipedia pathwaysSLC35G6
Orthology - Evolution
OrthoDB643664
GeneTree (enSembl)ENSG00000259224
Phylogenetic Trees/Animal Genes : TreeFamSLC35G6
Homologs : HomoloGeneSLC35G6
Homology/Alignments : Family Browser (UCSC)SLC35G6
Gene fusions - Rearrangements
Fusion : QuiverSLC35G6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC35G6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC35G6
dbVarSLC35G6
ClinVarSLC35G6
MonarchSLC35G6
1000_GenomesSLC35G6 
Exome Variant ServerSLC35G6
GNOMAD BrowserENSG00000259224
Varsome BrowserSLC35G6
ACMGSLC35G6 variants
VarityP0C7Q6
Genomic Variants (DGV)SLC35G6 [DGVbeta]
DECIPHERSLC35G6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC35G6 
Mutations
ICGC Data PortalSLC35G6 
TCGA Data PortalSLC35G6 
Broad Tumor PortalSLC35G6
OASIS PortalSLC35G6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC35G6  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSLC35G6
Mutations and Diseases : HGMDSLC35G6
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSLC35G6
DgiDB (Drug Gene Interaction Database)SLC35G6
DoCM (Curated mutations)SLC35G6
CIViC (Clinical Interpretations of Variants in Cancer)SLC35G6
Cancer3DSLC35G6
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSLC35G6
MedgenSLC35G6
Genetic Testing Registry SLC35G6
NextProtP0C7Q6 [Medical]
GENETestsSLC35G6
Target ValidationSLC35G6
Huge Navigator SLC35G6 [HugePedia]
ClinGenSLC35G6
Clinical trials, drugs, therapy
MyCancerGenomeSLC35G6
Protein Interactions : CTDSLC35G6
Pharm GKB GenePA134919830
PharosP0C7Q6
Clinical trialSLC35G6
Miscellaneous
canSAR (ICR)SLC35G6
HarmonizomeSLC35G6
DataMed IndexSLC35G6
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSLC35G6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:21:02 CEST 2021

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