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SLC35G6 (solute carrier family 35 member G6)

Identity

Alias_namesTMEM21B
AMAC1L3
transmembrane protein 21B
acyl-malonyl condensing enzyme 1-like 3
solute carrier family 35, member G6
Other alias
HGNC (Hugo) SLC35G6
LocusID (NCBI) 643664
Atlas_Id 73418
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 7481402 and ends at 7483064 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MRPL39 (21q21.3) / SLC35G6 (17p13.1)SLC35G6 (17p13.1) / ALOX12 (17p13.1)SLC35G6 (17p13.1) / FBN3 (19p13.2)
SLC35G6 (17p13.1) / SLC16A13 (17p13.1)SLC35G6 ALOX12SLC35G6 SLC16A13
SLC35G6 FBN3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC35G6   31351
Cards
Entrez_Gene (NCBI)SLC35G6  643664  solute carrier family 35 member G6
AliasesAMAC1L3; TMEM21B
GeneCards (Weizmann)SLC35G6
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:7481402-7483064 [Contig_View]  SLC35G6 [Vega]
TCGA cBioPortalSLC35G6
AceView (NCBI)SLC35G6
Genatlas (Paris)SLC35G6
WikiGenes643664
SOURCE (Princeton)SLC35G6
Genetics Home Reference (NIH)SLC35G6
Genomic and cartography
GoldenPath hg38 (UCSC)SLC35G6  -     chr17:7481402-7483064 +  17p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC35G6  -     17p13.1   [Description]    (hg19-Feb_2009)
EnsemblSLC35G6 - 17p13.1 [CytoView hg19]  SLC35G6 - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBISLC35G6 [Mapview hg19]  SLC35G6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001102614
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC35G6
Cluster EST : UnigeneHs.632234 [ NCBI ]
CGAP (NCI)Hs.632234
Gene ExpressionSLC35G6 [ NCBI-GEO ]   SLC35G6 [ EBI - ARRAY_EXPRESS ]   SLC35G6 [ SEEK ]   SLC35G6 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC35G6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)643664
GTEX Portal (Tissue expression)SLC35G6
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C7Q6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C7Q6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C7Q6
Splice isoforms : SwissVarP0C7Q6
PhosPhoSitePlusP0C7Q6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SLC35G6
DMDM Disease mutations643664
Blocks (Seattle)SLC35G6
SuperfamilyP0C7Q6
Peptide AtlasP0C7Q6
Protein Interaction databases
DIP (DOE-UCLA)P0C7Q6
IntAct (EBI)P0C7Q6
BioGRIDSLC35G6
STRING (EMBL)SLC35G6
ZODIACSLC35G6
Ontologies - Pathways
QuickGOP0C7Q6
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkSLC35G6
Atlas of Cancer Signalling NetworkSLC35G6
Wikipedia pathwaysSLC35G6
Orthology - Evolution
OrthoDB643664
Phylogenetic Trees/Animal Genes : TreeFamSLC35G6
HOVERGENP0C7Q6
HOGENOMP0C7Q6
Homologs : HomoloGeneSLC35G6
Homology/Alignments : Family Browser (UCSC)SLC35G6
Gene fusions - Rearrangements
Fusion: TCGASLC35G6 ALOX12
Fusion: TCGASLC35G6 SLC16A13
Fusion: TCGASLC35G6 FBN3
Fusion: Tumor Portal SLC35G6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC35G6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC35G6
dbVarSLC35G6
ClinVarSLC35G6
1000_GenomesSLC35G6 
Exome Variant ServerSLC35G6
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP643664
Genomic Variants (DGV)SLC35G6 [DGVbeta]
DECIPHERSLC35G6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC35G6 
Mutations
ICGC Data PortalSLC35G6 
TCGA Data PortalSLC35G6 
Broad Tumor PortalSLC35G6
OASIS PortalSLC35G6 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSLC35G6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC35G6
DgiDB (Drug Gene Interaction Database)SLC35G6
DoCM (Curated mutations)SLC35G6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC35G6 (select a term)
intoGenSLC35G6
Cancer3DSLC35G6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSLC35G6
Genetic Testing Registry SLC35G6
NextProtP0C7Q6 [Medical]
TSGene643664
GENETestsSLC35G6
Target ValidationSLC35G6
Huge Navigator SLC35G6 [HugePedia]
snp3D : Map Gene to Disease643664
BioCentury BCIQSLC35G6
ClinGenSLC35G6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD643664
Chemical/Pharm GKB GenePA134919830
Clinical trialSLC35G6
Miscellaneous
canSAR (ICR)SLC35G6 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC35G6
EVEXSLC35G6
GoPubMedSLC35G6
iHOPSLC35G6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:27:37 CET 2017

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