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SLC36A2 (solute carrier family 36 (proton/amino acid symporter), member 2)

Identity

Alias_namessolute carrier family 36 (proton/amino acid symporter), member 2
Alias_symbol (synonym)PAT2
tramdorin
TRAMD1
Other alias
HGNC (Hugo) SLC36A2
LocusID (NCBI) 153201
Atlas_Id 73419
Location 5q33.1  [Link to chromosome band 5q33]
Location_base_pair Starts at 150694539 and ends at 150727151 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
OIP5-AS1 (15q15.1) / SLC36A2 (5q33.1)SLC36A2 (5q33.1) / RPL24 (3q12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC36A2   18762
Cards
Entrez_Gene (NCBI)SLC36A2  153201  solute carrier family 36 (proton/amino acid symporter), member 2
AliasesPAT2; TRAMD1
GeneCards (Weizmann)SLC36A2
Ensembl hg19 (Hinxton)ENSG00000186335 [Gene_View]  chr5:150694539-150727151 [Contig_View]  SLC36A2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000186335 [Gene_View]  chr5:150694539-150727151 [Contig_View]  SLC36A2 [Vega]
ICGC DataPortalENSG00000186335
TCGA cBioPortalSLC36A2
AceView (NCBI)SLC36A2
Genatlas (Paris)SLC36A2
WikiGenes153201
SOURCE (Princeton)SLC36A2
Genetics Home Reference (NIH)SLC36A2
Genomic and cartography
GoldenPath hg19 (UCSC)SLC36A2  -     chr5:150694539-150727151 -  5q33.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC36A2  -     5q33.1   [Description]    (hg38-Dec_2013)
EnsemblSLC36A2 - 5q33.1 [CytoView hg19]  SLC36A2 - 5q33.1 [CytoView hg38]
Mapping of homologs : NCBISLC36A2 [Mapview hg19]  SLC36A2 [Mapview hg38]
OMIM138500   242600   608331   
Gene and transcription
Genbank (Entrez)AK297682 AK309575 AY162214 AY228364 BC101100
RefSeq transcript (Entrez)NM_181776
RefSeq genomic (Entrez)NC_000005 NC_018916 NG_027745 NT_029289 NW_004929324
Consensus coding sequences : CCDS (NCBI)SLC36A2
Cluster EST : UnigeneHs.483877 [ NCBI ]
CGAP (NCI)Hs.483877
Alternative Splicing GalleryENSG00000186335
Gene ExpressionSLC36A2 [ NCBI-GEO ]   SLC36A2 [ EBI - ARRAY_EXPRESS ]   SLC36A2 [ SEEK ]   SLC36A2 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC36A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)153201
GTEX Portal (Tissue expression)SLC36A2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ495M3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ495M3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ495M3
Splice isoforms : SwissVarQ495M3
PhosPhoSitePlusQ495M3
Domains : Interpro (EBI)AA_transpt_TM   
Domain families : Pfam (Sanger)Aa_trans (PF01490)   
Domain families : Pfam (NCBI)pfam01490   
Conserved Domain (NCBI)SLC36A2
DMDM Disease mutations153201
Blocks (Seattle)SLC36A2
SuperfamilyQ495M3
Human Protein AtlasENSG00000186335
Peptide AtlasQ495M3
HPRD12215
IPIIPI00376258   IPI00887898   IPI00889068   IPI01018150   IPI00978404   IPI00977189   
Protein Interaction databases
DIP (DOE-UCLA)Q495M3
IntAct (EBI)Q495M3
FunCoupENSG00000186335
BioGRIDSLC36A2
STRING (EMBL)SLC36A2
ZODIACSLC36A2
Ontologies - Pathways
QuickGOQ495M3
Ontology : AmiGOhydrogen:amino acid symporter activity  vacuolar membrane  plasma membrane  ion transport  amino acid transport  hydrogen ion transmembrane transporter activity  L-alanine transmembrane transporter activity  glycine transmembrane transporter activity  L-proline transmembrane transporter activity  L-alanine transport  glycine transport  proton transport  integral component of membrane  proline transmembrane transport  transmembrane transport  extracellular exosome  hydrogen ion transmembrane transport  
Ontology : EGO-EBIhydrogen:amino acid symporter activity  vacuolar membrane  plasma membrane  ion transport  amino acid transport  hydrogen ion transmembrane transporter activity  L-alanine transmembrane transporter activity  glycine transmembrane transporter activity  L-proline transmembrane transporter activity  L-alanine transport  glycine transport  proton transport  integral component of membrane  proline transmembrane transport  transmembrane transport  extracellular exosome  hydrogen ion transmembrane transport  
NDEx NetworkSLC36A2
Atlas of Cancer Signalling NetworkSLC36A2
Wikipedia pathwaysSLC36A2
Orthology - Evolution
OrthoDB153201
GeneTree (enSembl)ENSG00000186335
Phylogenetic Trees/Animal Genes : TreeFamSLC36A2
HOVERGENQ495M3
HOGENOMQ495M3
Homologs : HomoloGeneSLC36A2
Homology/Alignments : Family Browser (UCSC)SLC36A2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC36A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC36A2
dbVarSLC36A2
ClinVarSLC36A2
1000_GenomesSLC36A2 
Exome Variant ServerSLC36A2
ExAC (Exome Aggregation Consortium)SLC36A2 (select the gene name)
Genetic variants : HAPMAP153201
Genomic Variants (DGV)SLC36A2 [DGVbeta]
DECIPHER (Syndromes)5:150694539-150727151  ENSG00000186335
CONAN: Copy Number AnalysisSLC36A2 
Mutations
ICGC Data PortalSLC36A2 
TCGA Data PortalSLC36A2 
Broad Tumor PortalSLC36A2
OASIS PortalSLC36A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC36A2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC36A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC36A2
DgiDB (Drug Gene Interaction Database)SLC36A2
DoCM (Curated mutations)SLC36A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC36A2 (select a term)
intoGenSLC36A2
Cancer3DSLC36A2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM138500    242600    608331   
Orphanet10466   
MedgenSLC36A2
Genetic Testing Registry SLC36A2
NextProtQ495M3 [Medical]
TSGene153201
GENETestsSLC36A2
Huge Navigator SLC36A2 [HugePedia]
snp3D : Map Gene to Disease153201
BioCentury BCIQSLC36A2
ClinGenSLC36A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD153201
Chemical/Pharm GKB GenePA134899820
Clinical trialSLC36A2
Miscellaneous
canSAR (ICR)SLC36A2 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC36A2
EVEXSLC36A2
GoPubMedSLC36A2
iHOPSLC36A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:43:44 CET 2017

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