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SLC36A3 (solute carrier family 36 member 3)

Identity

Alias (NCBI)PAT3
TRAMD2
tramdorin2
HGNC (Hugo) SLC36A3
HGNC Alias symbPAT3
TRAMD2
tramdorin2
HGNC Previous namesolute carrier family 36, member 3
LocusID (NCBI) 285641
Atlas_Id 73420
Location 5q33.1  [Link to chromosome band 5q33]
Location_base_pair Starts at 151276361 and ends at 151303766 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SLC36A3   19659
Cards
Entrez_Gene (NCBI)SLC36A3    solute carrier family 36 member 3
AliasesPAT3; TRAMD2; tramdorin2
GeneCards (Weizmann)SLC36A3
Ensembl hg19 (Hinxton)ENSG00000186334 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186334 [Gene_View]  ENSG00000186334 [Sequence]  chr5:151276361-151303766 [Contig_View]  SLC36A3 [Vega]
ICGC DataPortalENSG00000186334
TCGA cBioPortalSLC36A3
AceView (NCBI)SLC36A3
Genatlas (Paris)SLC36A3
SOURCE (Princeton)SLC36A3
Genetics Home Reference (NIH)SLC36A3
Genomic and cartography
GoldenPath hg38 (UCSC)SLC36A3  -     chr5:151276361-151303766 -  5q33.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC36A3  -     5q33.1   [Description]    (hg19-Feb_2009)
GoldenPathSLC36A3 - 5q33.1 [CytoView hg19]  SLC36A3 - 5q33.1 [CytoView hg38]
ImmunoBaseENSG00000186334
Genome Data Viewer NCBISLC36A3 [Mapview hg19]  
OMIM608332   
Gene and transcription
Genbank (Entrez)AK127978 AK131483 AY162215 AY228365 BC101092
RefSeq transcript (Entrez)NM_001145017 NM_181774
Consensus coding sequences : CCDS (NCBI)SLC36A3
Gene ExpressionSLC36A3 [ NCBI-GEO ]   SLC36A3 [ EBI - ARRAY_EXPRESS ]   SLC36A3 [ SEEK ]   SLC36A3 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC36A3 [ Firebrowse - Broad ]
GenevisibleExpression of SLC36A3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285641
GTEX Portal (Tissue expression)SLC36A3
Human Protein AtlasENSG00000186334-SLC36A3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ495N2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ495N2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ495N2
PhosPhoSitePlusQ495N2
Domains : Interpro (EBI)AA_transpt_TM   
Domain families : Pfam (Sanger)Aa_trans (PF01490)   
Domain families : Pfam (NCBI)pfam01490   
Conserved Domain (NCBI)SLC36A3
SuperfamilyQ495N2
AlphaFold pdb e-kbQ495N2   
Human Protein Atlas [tissue]ENSG00000186334-SLC36A3 [tissue]
HPRD12216
Protein Interaction databases
DIP (DOE-UCLA)Q495N2
IntAct (EBI)Q495N2
BioGRIDSLC36A3
STRING (EMBL)SLC36A3
ZODIACSLC36A3
Ontologies - Pathways
QuickGOQ495N2
Ontology : AmiGOamino acid transmembrane transport  amino acid:proton symporter activity  amino acid transmembrane transporter activity  L-alanine transmembrane transporter activity  glycine transmembrane transporter activity  L-proline transmembrane transporter activity  L-alanine transport  glycine transport  integral component of membrane  proline transmembrane transport  proton transmembrane transport  
Ontology : EGO-EBIamino acid transmembrane transport  amino acid:proton symporter activity  amino acid transmembrane transporter activity  L-alanine transmembrane transporter activity  glycine transmembrane transporter activity  L-proline transmembrane transporter activity  L-alanine transport  glycine transport  integral component of membrane  proline transmembrane transport  proton transmembrane transport  
NDEx NetworkSLC36A3
Atlas of Cancer Signalling NetworkSLC36A3
Wikipedia pathwaysSLC36A3
Orthology - Evolution
OrthoDB285641
GeneTree (enSembl)ENSG00000186334
Phylogenetic Trees/Animal Genes : TreeFamSLC36A3
Homologs : HomoloGeneSLC36A3
Homology/Alignments : Family Browser (UCSC)SLC36A3
Gene fusions - Rearrangements
Fusion : QuiverSLC36A3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC36A3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC36A3
dbVarSLC36A3
ClinVarSLC36A3
MonarchSLC36A3
1000_GenomesSLC36A3 
Exome Variant ServerSLC36A3
GNOMAD BrowserENSG00000186334
Varsome BrowserSLC36A3
ACMGSLC36A3 variants
VarityQ495N2
Genomic Variants (DGV)SLC36A3 [DGVbeta]
DECIPHERSLC36A3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC36A3 
Mutations
ICGC Data PortalSLC36A3 
TCGA Data PortalSLC36A3 
Broad Tumor PortalSLC36A3
OASIS PortalSLC36A3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC36A3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSLC36A3
Mutations and Diseases : HGMDSLC36A3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSLC36A3
DgiDB (Drug Gene Interaction Database)SLC36A3
DoCM (Curated mutations)SLC36A3
CIViC (Clinical Interpretations of Variants in Cancer)SLC36A3
Cancer3DSLC36A3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608332   
Orphanet
DisGeNETSLC36A3
MedgenSLC36A3
Genetic Testing Registry SLC36A3
NextProtQ495N2 [Medical]
GENETestsSLC36A3
Target ValidationSLC36A3
Huge Navigator SLC36A3 [HugePedia]
ClinGenSLC36A3
Clinical trials, drugs, therapy
MyCancerGenomeSLC36A3
Protein Interactions : CTDSLC36A3
Pharm GKB GenePA134875494
PharosQ495N2
Clinical trialSLC36A3
Miscellaneous
canSAR (ICR)SLC36A3
HarmonizomeSLC36A3
DataMed IndexSLC36A3
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSLC36A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:21:02 CEST 2021

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