Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC36A3 (solute carrier family 36, member 3)

Identity

Alias_namessolute carrier family 36, member 3
Alias_symbol (synonym)PAT3
TRAMD2
tramdorin2
Other alias
HGNC (Hugo) SLC36A3
LocusID (NCBI) 285641
Atlas_Id 73420
Location 5q33.1  [Link to chromosome band 5q33]
Location_base_pair Starts at 150655926 and ends at 150683334 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC36A3   19659
Cards
Entrez_Gene (NCBI)SLC36A3  285641  solute carrier family 36, member 3
AliasesPAT3; TRAMD2; tramdorin2
GeneCards (Weizmann)SLC36A3
Ensembl hg19 (Hinxton)ENSG00000186334 [Gene_View]  chr5:150655926-150683334 [Contig_View]  SLC36A3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000186334 [Gene_View]  chr5:150655926-150683334 [Contig_View]  SLC36A3 [Vega]
ICGC DataPortalENSG00000186334
TCGA cBioPortalSLC36A3
AceView (NCBI)SLC36A3
Genatlas (Paris)SLC36A3
WikiGenes285641
SOURCE (Princeton)SLC36A3
Genetics Home Reference (NIH)SLC36A3
Genomic and cartography
GoldenPath hg19 (UCSC)SLC36A3  -     chr5:150655926-150683334 -  5q33.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC36A3  -     5q33.1   [Description]    (hg38-Dec_2013)
EnsemblSLC36A3 - 5q33.1 [CytoView hg19]  SLC36A3 - 5q33.1 [CytoView hg38]
Mapping of homologs : NCBISLC36A3 [Mapview hg19]  SLC36A3 [Mapview hg38]
OMIM608332   
Gene and transcription
Genbank (Entrez)AK127978 AK131483 AY162215 AY228365 BC101092
RefSeq transcript (Entrez)NM_001145017 NM_181774
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_029289 NW_004929324
Consensus coding sequences : CCDS (NCBI)SLC36A3
Cluster EST : UnigeneHs.720893 [ NCBI ]
CGAP (NCI)Hs.720893
Alternative Splicing GalleryENSG00000186334
Gene ExpressionSLC36A3 [ NCBI-GEO ]   SLC36A3 [ EBI - ARRAY_EXPRESS ]   SLC36A3 [ SEEK ]   SLC36A3 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC36A3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285641
GTEX Portal (Tissue expression)SLC36A3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ495N2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ495N2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ495N2
Splice isoforms : SwissVarQ495N2
PhosPhoSitePlusQ495N2
Domains : Interpro (EBI)AA_transpt_TM   
Domain families : Pfam (Sanger)Aa_trans (PF01490)   
Domain families : Pfam (NCBI)pfam01490   
Conserved Domain (NCBI)SLC36A3
DMDM Disease mutations285641
Blocks (Seattle)SLC36A3
SuperfamilyQ495N2
Human Protein AtlasENSG00000186334
Peptide AtlasQ495N2
HPRD12216
IPIIPI00418819   IPI00887051   IPI00442132   
Protein Interaction databases
DIP (DOE-UCLA)Q495N2
IntAct (EBI)Q495N2
FunCoupENSG00000186334
BioGRIDSLC36A3
STRING (EMBL)SLC36A3
ZODIACSLC36A3
Ontologies - Pathways
QuickGOQ495N2
Ontology : AmiGOhydrogen:amino acid symporter activity  vacuolar membrane  hydrogen ion transmembrane transporter activity  L-alanine transmembrane transporter activity  glycine transmembrane transporter activity  L-proline transmembrane transporter activity  L-alanine transport  glycine transport  proton transport  integral component of membrane  proline transmembrane transport  hydrogen ion transmembrane transport  
Ontology : EGO-EBIhydrogen:amino acid symporter activity  vacuolar membrane  hydrogen ion transmembrane transporter activity  L-alanine transmembrane transporter activity  glycine transmembrane transporter activity  L-proline transmembrane transporter activity  L-alanine transport  glycine transport  proton transport  integral component of membrane  proline transmembrane transport  hydrogen ion transmembrane transport  
NDEx NetworkSLC36A3
Atlas of Cancer Signalling NetworkSLC36A3
Wikipedia pathwaysSLC36A3
Orthology - Evolution
OrthoDB285641
GeneTree (enSembl)ENSG00000186334
Phylogenetic Trees/Animal Genes : TreeFamSLC36A3
HOVERGENQ495N2
HOGENOMQ495N2
Homologs : HomoloGeneSLC36A3
Homology/Alignments : Family Browser (UCSC)SLC36A3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC36A3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC36A3
dbVarSLC36A3
ClinVarSLC36A3
1000_GenomesSLC36A3 
Exome Variant ServerSLC36A3
ExAC (Exome Aggregation Consortium)SLC36A3 (select the gene name)
Genetic variants : HAPMAP285641
Genomic Variants (DGV)SLC36A3 [DGVbeta]
DECIPHER (Syndromes)5:150655926-150683334  ENSG00000186334
CONAN: Copy Number AnalysisSLC36A3 
Mutations
ICGC Data PortalSLC36A3 
TCGA Data PortalSLC36A3 
Broad Tumor PortalSLC36A3
OASIS PortalSLC36A3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC36A3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC36A3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC36A3
DgiDB (Drug Gene Interaction Database)SLC36A3
DoCM (Curated mutations)SLC36A3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC36A3 (select a term)
intoGenSLC36A3
Cancer3DSLC36A3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608332   
Orphanet
MedgenSLC36A3
Genetic Testing Registry SLC36A3
NextProtQ495N2 [Medical]
TSGene285641
GENETestsSLC36A3
Huge Navigator SLC36A3 [HugePedia]
snp3D : Map Gene to Disease285641
BioCentury BCIQSLC36A3
ClinGenSLC36A3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285641
Chemical/Pharm GKB GenePA134875494
Clinical trialSLC36A3
Miscellaneous
canSAR (ICR)SLC36A3 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC36A3
EVEXSLC36A3
GoPubMedSLC36A3
iHOPSLC36A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:43:44 CET 2017

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