Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SLC36A4 (solute carrier family 36 member 4)

Identity

Alias (NCBI)PAT4
HGNC (Hugo) SLC36A4
HGNC Alias symbPAT4
FLJ38932
HGNC Previous namesolute carrier family 36 (proton/amino acid symporter), member 4
LocusID (NCBI) 120103
Atlas_Id 56370
Location 11q21  [Link to chromosome band 11q21]
Location_base_pair Starts at 93144174 and ends at 93197991 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SLC36A4 (11q21) / CSH1 (17q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SLC36A4   19660
Cards
Entrez_Gene (NCBI)SLC36A4    solute carrier family 36 member 4
AliasesPAT4
GeneCards (Weizmann)SLC36A4
Ensembl hg19 (Hinxton)ENSG00000180773 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180773 [Gene_View]  ENSG00000180773 [Sequence]  chr11:93144174-93197991 [Contig_View]  SLC36A4 [Vega]
ICGC DataPortalENSG00000180773
TCGA cBioPortalSLC36A4
AceView (NCBI)SLC36A4
Genatlas (Paris)SLC36A4
SOURCE (Princeton)SLC36A4
Genetics Home Reference (NIH)SLC36A4
Genomic and cartography
GoldenPath hg38 (UCSC)SLC36A4  -     chr11:93144174-93197991 -  11q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC36A4  -     11q21   [Description]    (hg19-Feb_2009)
GoldenPathSLC36A4 - 11q21 [CytoView hg19]  SLC36A4 - 11q21 [CytoView hg38]
ImmunoBaseENSG00000180773
genome Data Viewer NCBISLC36A4 [Mapview hg19]  
OMIM613760   
Gene and transcription
Genbank (Entrez)AJ295983 AK093898 AK096251 AK096912 AY162216
RefSeq transcript (Entrez)NM_001286139 NM_152313
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC36A4
Alternative Splicing GalleryENSG00000180773
Gene ExpressionSLC36A4 [ NCBI-GEO ]   SLC36A4 [ EBI - ARRAY_EXPRESS ]   SLC36A4 [ SEEK ]   SLC36A4 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC36A4 [ Firebrowse - Broad ]
GenevisibleExpression of SLC36A4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)120103
GTEX Portal (Tissue expression)SLC36A4
Human Protein AtlasENSG00000180773-SLC36A4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6YBV0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6YBV0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6YBV0
Splice isoforms : SwissVarQ6YBV0
PhosPhoSitePlusQ6YBV0
Domains : Interpro (EBI)AA_transpt_TM   
Domain families : Pfam (Sanger)Aa_trans (PF01490)   
Domain families : Pfam (NCBI)pfam01490   
Conserved Domain (NCBI)SLC36A4
Blocks (Seattle)SLC36A4
SuperfamilyQ6YBV0
Human Protein Atlas [tissue]ENSG00000180773-SLC36A4 [tissue]
Peptide AtlasQ6YBV0
HPRD15379
IPIIPI00419349   IPI00869176   IPI00334934   IPI00978531   IPI00979140   
Protein Interaction databases
DIP (DOE-UCLA)Q6YBV0
IntAct (EBI)Q6YBV0
BioGRIDSLC36A4
STRING (EMBL)SLC36A4
ZODIACSLC36A4
Ontologies - Pathways
QuickGOQ6YBV0
Ontology : AmiGOamino acid transmembrane transport  plasma membrane  amino acid transmembrane transporter activity  L-alanine transmembrane transporter activity  L-alanine transmembrane transporter activity  L-proline transmembrane transporter activity  L-proline transmembrane transporter activity  L-proline transmembrane transporter activity  L-tryptophan transmembrane transporter activity  L-tryptophan transmembrane transporter activity  symporter activity  L-alanine transport  L-alanine transport  proline transport  tryptophan transport  integral component of membrane  L-proline import across plasma membrane  L-tryptophan transmembrane transport  
Ontology : EGO-EBIamino acid transmembrane transport  plasma membrane  amino acid transmembrane transporter activity  L-alanine transmembrane transporter activity  L-alanine transmembrane transporter activity  L-proline transmembrane transporter activity  L-proline transmembrane transporter activity  L-proline transmembrane transporter activity  L-tryptophan transmembrane transporter activity  L-tryptophan transmembrane transporter activity  symporter activity  L-alanine transport  L-alanine transport  proline transport  tryptophan transport  integral component of membrane  L-proline import across plasma membrane  L-tryptophan transmembrane transport  
NDEx NetworkSLC36A4
Atlas of Cancer Signalling NetworkSLC36A4
Wikipedia pathwaysSLC36A4
Orthology - Evolution
OrthoDB120103
GeneTree (enSembl)ENSG00000180773
Phylogenetic Trees/Animal Genes : TreeFamSLC36A4
HOGENOMQ6YBV0
Homologs : HomoloGeneSLC36A4
Homology/Alignments : Family Browser (UCSC)SLC36A4
Gene fusions - Rearrangements
Fusion : QuiverSLC36A4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC36A4 [hg38]
dbVarSLC36A4
ClinVarSLC36A4
MonarchSLC36A4
1000_GenomesSLC36A4 
Exome Variant ServerSLC36A4
GNOMAD BrowserENSG00000180773
Varsome BrowserSLC36A4
Genomic Variants (DGV)SLC36A4 [DGVbeta]
DECIPHERSLC36A4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC36A4 
Mutations
ICGC Data PortalSLC36A4 
TCGA Data PortalSLC36A4 
Broad Tumor PortalSLC36A4
OASIS PortalSLC36A4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC36A4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSLC36A4
Mutations and Diseases : HGMDSLC36A4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC36A4
DgiDB (Drug Gene Interaction Database)SLC36A4
DoCM (Curated mutations)SLC36A4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC36A4 (select a term)
intoGenSLC36A4
Cancer3DSLC36A4(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613760   
Orphanet
DisGeNETSLC36A4
MedgenSLC36A4
Genetic Testing Registry SLC36A4
NextProtQ6YBV0 [Medical]
GENETestsSLC36A4
Target ValidationSLC36A4
Huge Navigator SLC36A4 [HugePedia]
ClinGenSLC36A4
Clinical trials, drugs, therapy
MyCancerGenomeSLC36A4
Protein Interactions : CTD
Pharm GKB GenePA134908925
PharosQ6YBV0
Clinical trialSLC36A4
Miscellaneous
canSAR (ICR)SLC36A4 (select the gene name)
HarmonizomeSLC36A4
DataMed IndexSLC36A4
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSLC36A4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jan 1 18:37:53 CET 2021
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