Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SLC37A2 (solute carrier family 37 member 2)

Identity

Alias_namessolute carrier family 37 (glycerol-3-phosphate transporter), member 2
solute carrier family 37 (glucose-6-phosphate transporter), member 2
Alias_symbol (synonym)FLJ00171
Other aliaspp11662
HGNC (Hugo) SLC37A2
LocusID (NCBI) 219855
Atlas_Id 73422
Location 11q24.2  [Link to chromosome band 11q24]
Location_base_pair Starts at 125063117 and ends at 125090516 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CCDC15 (11q24.2) / SLC37A2 (11q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SLC37A2   20644
Cards
Entrez_Gene (NCBI)SLC37A2  219855  solute carrier family 37 member 2
Aliasespp11662
GeneCards (Weizmann)SLC37A2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:125063117-125090516 [Contig_View]  SLC37A2 [Vega]
TCGA cBioPortalSLC37A2
AceView (NCBI)SLC37A2
Genatlas (Paris)SLC37A2
WikiGenes219855
SOURCE (Princeton)SLC37A2
Genetics Home Reference (NIH)SLC37A2
Genomic and cartography
GoldenPath hg38 (UCSC)SLC37A2  -     chr11:125063117-125090516 +  11q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC37A2  -     11q24.2   [Description]    (hg19-Feb_2009)
EnsemblSLC37A2 - 11q24.2 [CytoView hg19]  SLC37A2 - 11q24.2 [CytoView hg38]
Mapping of homologs : NCBISLC37A2 [Mapview hg19]  SLC37A2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF318322 AK074100 AK074207 AK290314 AK296975
RefSeq transcript (Entrez)NM_001145290 NM_198277
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC37A2
Cluster EST : UnigeneHs.352661 [ NCBI ]
CGAP (NCI)Hs.352661
Gene ExpressionSLC37A2 [ NCBI-GEO ]   SLC37A2 [ EBI - ARRAY_EXPRESS ]   SLC37A2 [ SEEK ]   SLC37A2 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC37A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219855
GTEX Portal (Tissue expression)SLC37A2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TED4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TED4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TED4
Splice isoforms : SwissVarQ8TED4
PhosPhoSitePlusQ8TED4
Domaine pattern : Prosite (Expaxy)MFS (PS50850)   
Domains : Interpro (EBI)MFS    MFS_dom    Sugar_P_transporter   
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
Conserved Domain (NCBI)SLC37A2
DMDM Disease mutations219855
Blocks (Seattle)SLC37A2
SuperfamilyQ8TED4
Peptide AtlasQ8TED4
HPRD15380
IPIIPI00869125   IPI00179022   IPI00152773   IPI00868899   IPI00103870   
Protein Interaction databases
DIP (DOE-UCLA)Q8TED4
IntAct (EBI)Q8TED4
BioGRIDSLC37A2
STRING (EMBL)SLC37A2
ZODIACSLC37A2
Ontologies - Pathways
QuickGOQ8TED4
Ontology : AmiGOcarbohydrate transport  glucose-6-phosphate transport  integral component of endoplasmic reticulum membrane  phosphate ion transmembrane transport  glucose 6-phosphate:inorganic phosphate antiporter activity  extracellular exosome  
Ontology : EGO-EBIcarbohydrate transport  glucose-6-phosphate transport  integral component of endoplasmic reticulum membrane  phosphate ion transmembrane transport  glucose 6-phosphate:inorganic phosphate antiporter activity  extracellular exosome  
NDEx NetworkSLC37A2
Atlas of Cancer Signalling NetworkSLC37A2
Wikipedia pathwaysSLC37A2
Orthology - Evolution
OrthoDB219855
Phylogenetic Trees/Animal Genes : TreeFamSLC37A2
HOVERGENQ8TED4
HOGENOMQ8TED4
Homologs : HomoloGeneSLC37A2
Homology/Alignments : Family Browser (UCSC)SLC37A2
Gene fusions - Rearrangements
Fusion : QuiverSLC37A2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC37A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC37A2
dbVarSLC37A2
ClinVarSLC37A2
1000_GenomesSLC37A2 
Exome Variant ServerSLC37A2
Genetic variants : HAPMAP219855
Genomic Variants (DGV)SLC37A2 [DGVbeta]
DECIPHERSLC37A2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC37A2 
Mutations
ICGC Data PortalSLC37A2 
TCGA Data PortalSLC37A2 
Broad Tumor PortalSLC37A2
OASIS PortalSLC37A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC37A2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC37A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC37A2
DgiDB (Drug Gene Interaction Database)SLC37A2
DoCM (Curated mutations)SLC37A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC37A2 (select a term)
intoGenSLC37A2
Cancer3DSLC37A2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSLC37A2
MedgenSLC37A2
Genetic Testing Registry SLC37A2
NextProtQ8TED4 [Medical]
TSGene219855
GENETestsSLC37A2
Target ValidationSLC37A2
Huge Navigator SLC37A2 [HugePedia]
snp3D : Map Gene to Disease219855
BioCentury BCIQSLC37A2
ClinGenSLC37A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219855
Chemical/Pharm GKB GenePA134917577
Clinical trialSLC37A2
Miscellaneous
canSAR (ICR)SLC37A2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC37A2
EVEXSLC37A2
GoPubMedSLC37A2
iHOPSLC37A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Feb 23 18:51:40 CET 2018
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.