Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SLC37A4 (solute carrier family 37 (glucose-6-phosphate transporter), member 4)

Identity

Other namesG6PT1
G6PT2
G6PT3
GSD1b
GSD1c
GSD1d
TRG-19
TRG19
HGNC (Hugo) SLC37A4
LocusID (NCBI) 2542
Location 11q23.3
Location_base_pair Starts at 118895061 and ends at 118901616 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SLC37A4   4061
Cards
Entrez_Gene (NCBI)SLC37A4  2542  solute carrier family 37 (glucose-6-phosphate transporter), member 4
GeneCards (Weizmann)SLC37A4
Ensembl (Hinxton)ENSG00000137700 [Gene_View]  chr11:118895061-118901616 [Contig_View]  SLC37A4 [Vega]
ICGC DataPortalENSG00000137700
AceView (NCBI)SLC37A4
Genatlas (Paris)SLC37A4
WikiGenes2542
SOURCE (Princeton)NM_001164277 NM_001164278 NM_001164279 NM_001164280 NM_001467
Genomic and cartography
GoldenPath (UCSC)SLC37A4  -  11q23.3   chr11:118895061-118901616 -  11q23.3   [Description]    (hg19-Feb_2009)
EnsemblSLC37A4 - 11q23.3 [CytoView]
Mapping of homologs : NCBISLC37A4 [Mapview]
OMIM232220   232240   602671   
Gene and transcription
Genbank (Entrez)AB209026 AF110819 AF110820 AF110821 AF110822
RefSeq transcript (Entrez)NM_001164277 NM_001164278 NM_001164279 NM_001164280 NM_001467
RefSeq genomic (Entrez)AC_000143 NC_000011 NC_018922 NG_013331 NT_033899 NW_001838042 NW_004929381
Consensus coding sequences : CCDS (NCBI)SLC37A4
Cluster EST : UnigeneHs.719203 [ NCBI ]
CGAP (NCI)Hs.719203
Alternative Splicing : Fast-db (Paris)GSHG0006242
Alternative Splicing GalleryENSG00000137700
Gene ExpressionSLC37A4 [ NCBI-GEO ]     SLC37A4 [ SEEK ]   SLC37A4 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43826 (Uniprot)
NextProtO43826  [Medical]
With graphics : InterProO43826
Splice isoforms : SwissVarO43826 (Swissvar)
Domaine pattern : Prosite (Expaxy)GLPT (PS00942)    MFS (PS50850)   
Domains : Interpro (EBI)MFS    MFS_dom    MFS_dom_general_subst_transpt    Sugar-P_transporter_CS    Sugar_P_transporter   
Related proteins : CluSTrO43826
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
DMDM Disease mutations2542
Blocks (Seattle)O43826
Human Protein AtlasENSG00000137700
Peptide AtlasO43826
HPRD04052
IPIIPI00014479   IPI00217409   IPI00556237   IPI00943754   
Protein Interaction databases
DIP (DOE-UCLA)O43826
IntAct (EBI)O43826
FunCoupENSG00000137700
BioGRIDSLC37A4
InParanoidO43826
Interologous Interaction database O43826
IntegromeDBSLC37A4
STRING (EMBL)SLC37A4
Ontologies - Pathways
Ontology : AmiGOtransporter activity  endoplasmic reticulum  endoplasmic reticulum membrane  carbohydrate metabolic process  glucose metabolic process  transport  hexose transport  glucose-6-phosphate transmembrane transporter activity  glucose-6-phosphate transmembrane transporter activity  glucose transport  glucose-6-phosphate transport  glucose-6-phosphate transport  membrane  integral component of membrane  integral component of endoplasmic reticulum membrane  glucose homeostasis  small molecule metabolic process  transmembrane transport  
Ontology : EGO-EBItransporter activity  endoplasmic reticulum  endoplasmic reticulum membrane  carbohydrate metabolic process  glucose metabolic process  transport  hexose transport  glucose-6-phosphate transmembrane transporter activity  glucose-6-phosphate transmembrane transporter activity  glucose transport  glucose-6-phosphate transport  glucose-6-phosphate transport  membrane  integral component of membrane  integral component of endoplasmic reticulum membrane  glucose homeostasis  small molecule metabolic process  transmembrane transport  
Pathways : KEGGCarbohydrate digestion and absorption   
Protein Interaction DatabaseSLC37A4
Wikipedia pathwaysSLC37A4
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SLC37A4
SNP (GeneSNP Utah)SLC37A4
SNP : HGBaseSLC37A4
Genetic variants : HAPMAPSLC37A4
1000_GenomesSLC37A4 
ICGC programENSG00000137700 
CONAN: Copy Number AnalysisSLC37A4 
Somatic Mutations in Cancer : COSMICSLC37A4 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
Mutations and Diseases : HGMDSLC37A4
OMIM232220    232240    602671   
MedgenSLC37A4
GENETestsSLC37A4
Disease Genetic AssociationSLC37A4
Huge Navigator SLC37A4 [HugePedia]  SLC37A4 [HugeCancerGEM]
Genomic VariantsSLC37A4  SLC37A4 [DGVbeta]
Exome VariantSLC37A4
dbVarSLC37A4
ClinVarSLC37A4
snp3D : Map Gene to Disease2542
General knowledge
Homologs : HomoloGeneSLC37A4
Homology/Alignments : Family Browser (UCSC)SLC37A4
Phylogenetic Trees/Animal Genes : TreeFamSLC37A4
Chemical/Protein Interactions : CTD2542
Chemical/Pharm GKB GenePA28472
Clinical trialSLC37A4
Cancer Resource (Charite)ENSG00000137700
Other databases
Probes
Litterature
PubMed49 Pubmed reference(s) in Entrez
CoreMineSLC37A4
iHOPSLC37A4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 13 13:17:11 CEST 2014

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.