Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SLC37A4 (solute carrier family 37 member 4)

Identity

Other namesG6PT1
G6PT2
G6PT3
GSD1b
GSD1c
GSD1d
PRO0685
TRG-19
TRG19
HGNC (Hugo) SLC37A4
LocusID (NCBI) 2542
Atlas_Id 47556
Location 11q23.3  [Link to chromosome band 11q23]
Location_base_pair Starts at 118895061 and ends at 118901616 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Cancer prone implicated (Data extracted from papers in the Atlas) [ 1 ]
  Glycogen storage disease type I (GSD I)

External links

Nomenclature
HGNC (Hugo)SLC37A4   4061
Cards
Entrez_Gene (NCBI)SLC37A4  2542  solute carrier family 37 member 4
AliasesG6PT1; G6PT2; G6PT3; GSD1b; 
GSD1c; GSD1d; PRO0685; TRG-19; TRG19
GeneCards (Weizmann)SLC37A4
Ensembl hg19 (Hinxton)ENSG00000137700 [Gene_View]  chr11:118895061-118901616 [Contig_View]  SLC37A4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000137700 [Gene_View]  chr11:118895061-118901616 [Contig_View]  SLC37A4 [Vega]
ICGC DataPortalENSG00000137700
TCGA cBioPortalSLC37A4
AceView (NCBI)SLC37A4
Genatlas (Paris)SLC37A4
WikiGenes2542
SOURCE (Princeton)SLC37A4
Genomic and cartography
GoldenPath hg19 (UCSC)SLC37A4  -     chr11:118895061-118901616 -  11q23.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC37A4  -     11q23.3   [Description]    (hg38-Dec_2013)
EnsemblSLC37A4 - 11q23.3 [CytoView hg19]  SLC37A4 - 11q23.3 [CytoView hg38]
Mapping of homologs : NCBISLC37A4 [Mapview hg19]  SLC37A4 [Mapview hg38]
OMIM232220   232240   602671   
Gene and transcription
Genbank (Entrez)AB209026 AF110819 AF110820 AF110821 AF110822
RefSeq transcript (Entrez)NM_001164277 NM_001164278 NM_001164279 NM_001164280 NM_001467
RefSeq genomic (Entrez)NC_000011 NC_018922 NG_013331 NT_033899 NW_004929381 NW_009646203
Consensus coding sequences : CCDS (NCBI)SLC37A4
Cluster EST : UnigeneHs.719203 [ NCBI ]
CGAP (NCI)Hs.719203
Alternative Splicing GalleryENSG00000137700
Gene ExpressionSLC37A4 [ NCBI-GEO ]   SLC37A4 [ EBI - ARRAY_EXPRESS ]   SLC37A4 [ SEEK ]   SLC37A4 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC37A4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2542
GTEX Portal (Tissue expression)SLC37A4
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43826 (Uniprot)
NextProtO43826  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43826
Splice isoforms : SwissVarO43826 (Swissvar)
PhosPhoSitePlusO43826
Domaine pattern : Prosite (Expaxy)GLPT (PS00942)    MFS (PS50850)   
Domains : Interpro (EBI)MFS    MFS_dom    Sugar-P_transporter_CS    Sugar_P_transporter   
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
DMDM Disease mutations2542
Blocks (Seattle)SLC37A4
SuperfamilyO43826
Human Protein AtlasENSG00000137700
Peptide AtlasO43826
HPRD04052
IPIIPI00014479   IPI00217409   IPI00556237   IPI00943754   
Protein Interaction databases
DIP (DOE-UCLA)O43826
IntAct (EBI)O43826
FunCoupENSG00000137700
BioGRIDSLC37A4
STRING (EMBL)SLC37A4
ZODIACSLC37A4
Ontologies - Pathways
QuickGOO43826
Ontology : AmiGOpositive regulation of defense response to virus by host  transporter activity  endoplasmic reticulum  endoplasmic reticulum membrane  glucose metabolic process  transport  anion transport  glucose-6-phosphate transmembrane transporter activity  glucose-6-phosphate transmembrane transporter activity  glucose transport  glucose-6-phosphate transport  glucose-6-phosphate transport  membrane  integral component of membrane  integral component of endoplasmic reticulum membrane  phosphate ion transmembrane transport  glucose homeostasis  glucose 6-phosphate:inorganic phosphate antiporter activity  glucose 6-phosphate:inorganic phosphate antiporter activity  mitophagy in response to mitochondrial depolarization  xenophagy  
Ontology : EGO-EBIpositive regulation of defense response to virus by host  transporter activity  endoplasmic reticulum  endoplasmic reticulum membrane  glucose metabolic process  transport  anion transport  glucose-6-phosphate transmembrane transporter activity  glucose-6-phosphate transmembrane transporter activity  glucose transport  glucose-6-phosphate transport  glucose-6-phosphate transport  membrane  integral component of membrane  integral component of endoplasmic reticulum membrane  phosphate ion transmembrane transport  glucose homeostasis  glucose 6-phosphate:inorganic phosphate antiporter activity  glucose 6-phosphate:inorganic phosphate antiporter activity  mitophagy in response to mitochondrial depolarization  xenophagy  
Pathways : KEGGCarbohydrate digestion and absorption   
NDEx NetworkSLC37A4
Atlas of Cancer Signalling NetworkSLC37A4
Wikipedia pathwaysSLC37A4
Orthology - Evolution
OrthoDB2542
GeneTree (enSembl)ENSG00000137700
Phylogenetic Trees/Animal Genes : TreeFamSLC37A4
Homologs : HomoloGeneSLC37A4
Homology/Alignments : Family Browser (UCSC)SLC37A4
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerSLC37A4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC37A4
dbVarSLC37A4
ClinVarSLC37A4
1000_GenomesSLC37A4 
Exome Variant ServerSLC37A4
ExAC (Exome Aggregation Consortium)SLC37A4 (select the gene name)
Genetic variants : HAPMAP2542
Genomic Variants (DGV)SLC37A4 [DGVbeta]
Mutations
ICGC Data PortalSLC37A4 
TCGA Data PortalSLC37A4 
Broad Tumor PortalSLC37A4
OASIS PortalSLC37A4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC37A4 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SLC37A4
DgiDB (Drug Gene Interaction Database)SLC37A4
DoCM (Curated mutations)SLC37A4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC37A4 (select a term)
intoGenSLC37A4
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)11:118895061-118901616  ENSG00000137700
CONAN: Copy Number AnalysisSLC37A4 
Mutations and Diseases : HGMDSLC37A4
OMIM232220    232240    602671   
MedgenSLC37A4
Genetic Testing Registry SLC37A4
NextProtO43826 [Medical]
TSGene2542
GENETestsSLC37A4
Huge Navigator SLC37A4 [HugePedia]
snp3D : Map Gene to Disease2542
BioCentury BCIQSLC37A4
ClinGenSLC37A4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2542
Chemical/Pharm GKB GenePA28472
Clinical trialSLC37A4
Miscellaneous
canSAR (ICR)SLC37A4 (select the gene name)
Probes
Litterature
PubMed52 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC37A4
EVEXSLC37A4
GoPubMedSLC37A4
iHOPSLC37A4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 19 19:13:42 CEST 2016
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