Atlas of Genetics and Cytogenetics in Oncology and Haematology

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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome

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SLC37A4 (solute carrier family 37 (glucose-6-phosphate transporter), member 4)

Identity

Other namesG6PT1
G6PT2
G6PT3
GSD1b
GSD1c
GSD1d
TRG-19
TRG19
HGNC (Hugo) SLC37A4
LocusID (NCBI) 2542
Location 11q23.3
Location_base_pair Starts at 118895061 and ends at 118901616 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SLC37A4   4061
Cards
Entrez_Gene (NCBI)SLC37A4  2542  solute carrier family 37 (glucose-6-phosphate transporter), member 4
GeneCards (Weizmann)SLC37A4
Ensembl hg19 (Hinxton)ENSG00000137700 [Gene_View]  chr11:118895061-118901616 [Contig_View]  SLC37A4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000137700 [Gene_View]  chr11:118895061-118901616 [Contig_View]  SLC37A4 [Vega]
ICGC DataPortalENSG00000137700
cBioPortalSLC37A4
AceView (NCBI)SLC37A4
Genatlas (Paris)SLC37A4
WikiGenes2542
SOURCE (Princeton)SLC37A4
Genomic and cartography
GoldenPath hg19 (UCSC)SLC37A4  -     chr11:118895061-118901616 -  11q23.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC37A4  -     11q23.3   [Description]    (hg38-Dec_2013)
EnsemblSLC37A4 - 11q23.3 [CytoView hg19]  SLC37A4 - 11q23.3 [CytoView hg38]
Mapping of homologs : NCBISLC37A4 [Mapview hg19]  SLC37A4 [Mapview hg38]
OMIM232220   232240   602671   
Gene and transcription
Genbank (Entrez)AB209026 AF110819 AF110820 AF110821 AF110822
RefSeq transcript (Entrez)NM_001164277 NM_001164278 NM_001164279 NM_001164280 NM_001467
RefSeq genomic (Entrez)AC_000143 NC_000011 NC_018922 NG_013331 NT_033899 NW_001838042 NW_004929381
Consensus coding sequences : CCDS (NCBI)SLC37A4
Cluster EST : UnigeneHs.719203 [ NCBI ]
CGAP (NCI)Hs.719203
Alternative Splicing : Fast-db (Paris)GSHG0006242
Alternative Splicing GalleryENSG00000137700
Gene ExpressionSLC37A4 [ NCBI-GEO ]     SLC37A4 [ SEEK ]   SLC37A4 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43826 (Uniprot)
NextProtO43826  [Medical]
With graphics : InterProO43826
Splice isoforms : SwissVarO43826 (Swissvar)
Domaine pattern : Prosite (Expaxy)GLPT (PS00942)    MFS (PS50850)   
Domains : Interpro (EBI)MFS    MFS_dom    MFS_dom_general_subst_transpt    Sugar-P_transporter_CS    Sugar_P_transporter   
Related proteins : CluSTrO43826
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
DMDM Disease mutations2542
Blocks (Seattle)O43826
Human Protein AtlasENSG00000137700
Peptide AtlasO43826
HPRD04052
IPIIPI00014479   IPI00217409   IPI00556237   IPI00943754   
Protein Interaction databases
DIP (DOE-UCLA)O43826
IntAct (EBI)O43826
FunCoupENSG00000137700
BioGRIDSLC37A4
IntegromeDBSLC37A4
STRING (EMBL)SLC37A4
Ontologies - Pathways
QuickGOO43826
Ontology : AmiGOtransporter activity  endoplasmic reticulum  endoplasmic reticulum membrane  carbohydrate metabolic process  glucose metabolic process  transport  hexose transport  glucose-6-phosphate transmembrane transporter activity  glucose-6-phosphate transmembrane transporter activity  glucose transport  glucose-6-phosphate transport  glucose-6-phosphate transport  membrane  integral component of membrane  integral component of endoplasmic reticulum membrane  glucose homeostasis  small molecule metabolic process  transmembrane transport  
Ontology : EGO-EBItransporter activity  endoplasmic reticulum  endoplasmic reticulum membrane  carbohydrate metabolic process  glucose metabolic process  transport  hexose transport  glucose-6-phosphate transmembrane transporter activity  glucose-6-phosphate transmembrane transporter activity  glucose transport  glucose-6-phosphate transport  glucose-6-phosphate transport  membrane  integral component of membrane  integral component of endoplasmic reticulum membrane  glucose homeostasis  small molecule metabolic process  transmembrane transport  
Pathways : KEGGCarbohydrate digestion and absorption   
Protein Interaction DatabaseSLC37A4
DoCM (Curated mutations)SLC37A4
Wikipedia pathwaysSLC37A4
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerSLC37A4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC37A4
dbVarSLC37A4
ClinVarSLC37A4
1000_GenomesSLC37A4 
Exome Variant ServerSLC37A4
SNP (GeneSNP Utah)SLC37A4
SNP : HGBaseSLC37A4
Genetic variants : HAPMAPSLC37A4
Genomic Variants (DGV)SLC37A4 [DGVbeta]
Mutations
ICGC Data PortalENSG00000137700 
Somatic Mutations in Cancer : COSMICSLC37A4 
CONAN: Copy Number AnalysisSLC37A4 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)11:118895061-118901616
Mutations and Diseases : HGMDSLC37A4
OMIM232220    232240    602671   
MedgenSLC37A4
NextProtO43826 [Medical]
GENETestsSLC37A4
Disease Genetic AssociationSLC37A4
Huge Navigator SLC37A4 [HugePedia]  SLC37A4 [HugeCancerGEM]
snp3D : Map Gene to Disease2542
DGIdb (Drug Gene Interaction db)SLC37A4
General knowledge
Homologs : HomoloGeneSLC37A4
Homology/Alignments : Family Browser (UCSC)SLC37A4
Phylogenetic Trees/Animal Genes : TreeFamSLC37A4
Chemical/Protein Interactions : CTD2542
Chemical/Pharm GKB GenePA28472
Clinical trialSLC37A4
Cancer Resource (Charite)ENSG00000137700
Other databases
Probes
Litterature
PubMed49 Pubmed reference(s) in Entrez
CoreMineSLC37A4
GoPubMedSLC37A4
iHOPSLC37A4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 14 18:36:52 CET 2015
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jlhuret@AtlasGeneticsOncology.org.