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SLC38A10 (solute carrier family 38 member 10)

Identity

Alias_namessolute carrier family 38
Alias_symbol (synonym)MGC15523
PP1744
Other alias
HGNC (Hugo) SLC38A10
LocusID (NCBI) 124565
Atlas_Id 54638
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 79218611 and ends at 79269139 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
BAIAP2 (17q25.3) / SLC38A10 (17q25.3)HAGHL (16p13.3) / SLC38A10 (17q25.3)SLC38A10 (17q25.3) / HAGHL (16p13.3)
SLC38A10 (17q25.3) / ZCCHC11 (1p32.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC38A10   28237
Cards
Entrez_Gene (NCBI)SLC38A10  124565  solute carrier family 38 member 10
AliasesPP1744
GeneCards (Weizmann)SLC38A10
Ensembl hg19 (Hinxton)ENSG00000157637 [Gene_View]  chr17:79218611-79269139 [Contig_View]  SLC38A10 [Vega]
Ensembl hg38 (Hinxton)ENSG00000157637 [Gene_View]  chr17:79218611-79269139 [Contig_View]  SLC38A10 [Vega]
ICGC DataPortalENSG00000157637
TCGA cBioPortalSLC38A10
AceView (NCBI)SLC38A10
Genatlas (Paris)SLC38A10
WikiGenes124565
SOURCE (Princeton)SLC38A10
Genetics Home Reference (NIH)SLC38A10
Genomic and cartography
GoldenPath hg19 (UCSC)SLC38A10  -     chr17:79218611-79269139 -  17q25.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC38A10  -     17q25.3   [Description]    (hg38-Dec_2013)
EnsemblSLC38A10 - 17q25.3 [CytoView hg19]  SLC38A10 - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBISLC38A10 [Mapview hg19]  SLC38A10 [Mapview hg38]
OMIM616525   
Gene and transcription
Genbank (Entrez)AF086389 AF217993 AI476273 AK093037 AK098424
RefSeq transcript (Entrez)NM_001037984 NM_138570
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)SLC38A10
Cluster EST : UnigeneHs.352240 [ NCBI ]
CGAP (NCI)Hs.352240
Alternative Splicing GalleryENSG00000157637
Gene ExpressionSLC38A10 [ NCBI-GEO ]   SLC38A10 [ EBI - ARRAY_EXPRESS ]   SLC38A10 [ SEEK ]   SLC38A10 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC38A10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)124565
GTEX Portal (Tissue expression)SLC38A10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HBR0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HBR0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HBR0
Splice isoforms : SwissVarQ9HBR0
PhosPhoSitePlusQ9HBR0
Domains : Interpro (EBI)AA_transpt_TM   
Domain families : Pfam (Sanger)Aa_trans (PF01490)   
Domain families : Pfam (NCBI)pfam01490   
Conserved Domain (NCBI)SLC38A10
DMDM Disease mutations124565
Blocks (Seattle)SLC38A10
SuperfamilyQ9HBR0
Human Protein AtlasENSG00000157637
Peptide AtlasQ9HBR0
HPRD17506
IPIIPI00443799   IPI00060283   IPI00884960   IPI00383028   IPI01012481   IPI01010068   
Protein Interaction databases
DIP (DOE-UCLA)Q9HBR0
IntAct (EBI)Q9HBR0
FunCoupENSG00000157637
BioGRIDSLC38A10
STRING (EMBL)SLC38A10
ZODIACSLC38A10
Ontologies - Pathways
QuickGOQ9HBR0
Ontology : AmiGOamino acid transmembrane transport  sodium ion transport  amino acid transmembrane transporter activity  integral component of membrane  bone development  
Ontology : EGO-EBIamino acid transmembrane transport  sodium ion transport  amino acid transmembrane transporter activity  integral component of membrane  bone development  
NDEx NetworkSLC38A10
Atlas of Cancer Signalling NetworkSLC38A10
Wikipedia pathwaysSLC38A10
Orthology - Evolution
OrthoDB124565
GeneTree (enSembl)ENSG00000157637
Phylogenetic Trees/Animal Genes : TreeFamSLC38A10
HOVERGENQ9HBR0
HOGENOMQ9HBR0
Homologs : HomoloGeneSLC38A10
Homology/Alignments : Family Browser (UCSC)SLC38A10
Gene fusions - Rearrangements
Fusion : MitelmanSLC38A10/ZCCHC11 [17q25.3/1p32.3]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC38A10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC38A10
dbVarSLC38A10
ClinVarSLC38A10
1000_GenomesSLC38A10 
Exome Variant ServerSLC38A10
ExAC (Exome Aggregation Consortium)SLC38A10 (select the gene name)
Genetic variants : HAPMAP124565
Genomic Variants (DGV)SLC38A10 [DGVbeta]
DECIPHER (Syndromes)17:79218611-79269139  ENSG00000157637
CONAN: Copy Number AnalysisSLC38A10 
Mutations
ICGC Data PortalSLC38A10 
TCGA Data PortalSLC38A10 
Broad Tumor PortalSLC38A10
OASIS PortalSLC38A10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC38A10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC38A10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC38A10
DgiDB (Drug Gene Interaction Database)SLC38A10
DoCM (Curated mutations)SLC38A10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC38A10 (select a term)
intoGenSLC38A10
Cancer3DSLC38A10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616525   
Orphanet
MedgenSLC38A10
Genetic Testing Registry SLC38A10
NextProtQ9HBR0 [Medical]
TSGene124565
GENETestsSLC38A10
Huge Navigator SLC38A10 [HugePedia]
snp3D : Map Gene to Disease124565
BioCentury BCIQSLC38A10
ClinGenSLC38A10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD124565
Chemical/Pharm GKB GenePA162403738
Clinical trialSLC38A10
Miscellaneous
canSAR (ICR)SLC38A10 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC38A10
EVEXSLC38A10
GoPubMedSLC38A10
iHOPSLC38A10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:19:47 CEST 2017

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