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SLC38A11 (solute carrier family 38 member 11)

Identity

Alias_namessolute carrier family 38, member 11
Alias_symbol (synonym)FLJ39822
AVT2
Other alias
HGNC (Hugo) SLC38A11
LocusID (NCBI) 151258
Atlas_Id 73424
Location 2q24.3  [Link to chromosome band 2q24]
Location_base_pair Starts at 164898199 and ends at 164955525 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
COBLL1 (2q24.3) / SLC38A11 (2q24.3)SLC38A11 (2q24.3) / RABGAP1L (1q25.1)SLC38A11 (2q24.3) / TANC1 (2q24.2)
TTC21B (2q24.3) / SLC38A11 (2q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC38A11   26836
Cards
Entrez_Gene (NCBI)SLC38A11  151258  solute carrier family 38 member 11
AliasesAVT2
GeneCards (Weizmann)SLC38A11
Ensembl hg19 (Hinxton)ENSG00000169507 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169507 [Gene_View]  chr2:164898199-164955525 [Contig_View]  SLC38A11 [Vega]
ICGC DataPortalENSG00000169507
TCGA cBioPortalSLC38A11
AceView (NCBI)SLC38A11
Genatlas (Paris)SLC38A11
WikiGenes151258
SOURCE (Princeton)SLC38A11
Genetics Home Reference (NIH)SLC38A11
Genomic and cartography
GoldenPath hg38 (UCSC)SLC38A11  -     chr2:164898199-164955525 -  2q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC38A11  -     2q24.3   [Description]    (hg19-Feb_2009)
EnsemblSLC38A11 - 2q24.3 [CytoView hg19]  SLC38A11 - 2q24.3 [CytoView hg38]
Mapping of homologs : NCBISLC38A11 [Mapview hg19]  SLC38A11 [Mapview hg38]
OMIM616526   
Gene and transcription
Genbank (Entrez)AK097141 AK293998 BC125156 BC125157
RefSeq transcript (Entrez)NM_001199148 NM_173512
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC38A11
Cluster EST : UnigeneHs.658702 [ NCBI ]
CGAP (NCI)Hs.658702
Alternative Splicing GalleryENSG00000169507
Gene ExpressionSLC38A11 [ NCBI-GEO ]   SLC38A11 [ EBI - ARRAY_EXPRESS ]   SLC38A11 [ SEEK ]   SLC38A11 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC38A11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)151258
GTEX Portal (Tissue expression)SLC38A11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ08AI6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ08AI6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ08AI6
Splice isoforms : SwissVarQ08AI6
PhosPhoSitePlusQ08AI6
Domains : Interpro (EBI)AA_transpt_TM   
Domain families : Pfam (Sanger)Aa_trans (PF01490)   
Domain families : Pfam (NCBI)pfam01490   
Conserved Domain (NCBI)SLC38A11
DMDM Disease mutations151258
Blocks (Seattle)SLC38A11
SuperfamilyQ08AI6
Human Protein AtlasENSG00000169507
Peptide AtlasQ08AI6
HPRD08267
IPIIPI00889144   IPI00167396   IPI00915975   IPI00917196   
Protein Interaction databases
DIP (DOE-UCLA)Q08AI6
IntAct (EBI)Q08AI6
FunCoupENSG00000169507
BioGRIDSLC38A11
STRING (EMBL)SLC38A11
ZODIACSLC38A11
Ontologies - Pathways
QuickGOQ08AI6
Ontology : AmiGOamino acid transmembrane transport  sodium ion transport  amino acid transmembrane transporter activity  integral component of membrane  
Ontology : EGO-EBIamino acid transmembrane transport  sodium ion transport  amino acid transmembrane transporter activity  integral component of membrane  
NDEx NetworkSLC38A11
Atlas of Cancer Signalling NetworkSLC38A11
Wikipedia pathwaysSLC38A11
Orthology - Evolution
OrthoDB151258
GeneTree (enSembl)ENSG00000169507
Phylogenetic Trees/Animal Genes : TreeFamSLC38A11
HOVERGENQ08AI6
HOGENOMQ08AI6
Homologs : HomoloGeneSLC38A11
Homology/Alignments : Family Browser (UCSC)SLC38A11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC38A11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC38A11
dbVarSLC38A11
ClinVarSLC38A11
1000_GenomesSLC38A11 
Exome Variant ServerSLC38A11
ExAC (Exome Aggregation Consortium)SLC38A11 (select the gene name)
Genetic variants : HAPMAP151258
Genomic Variants (DGV)SLC38A11 [DGVbeta]
DECIPHERSLC38A11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC38A11 
Mutations
ICGC Data PortalSLC38A11 
TCGA Data PortalSLC38A11 
Broad Tumor PortalSLC38A11
OASIS PortalSLC38A11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC38A11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC38A11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC38A11
DgiDB (Drug Gene Interaction Database)SLC38A11
DoCM (Curated mutations)SLC38A11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC38A11 (select a term)
intoGenSLC38A11
Cancer3DSLC38A11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616526   
Orphanet
MedgenSLC38A11
Genetic Testing Registry SLC38A11
NextProtQ08AI6 [Medical]
TSGene151258
GENETestsSLC38A11
Target ValidationSLC38A11
Huge Navigator SLC38A11 [HugePedia]
snp3D : Map Gene to Disease151258
BioCentury BCIQSLC38A11
ClinGenSLC38A11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD151258
Chemical/Pharm GKB GenePA162403771
Clinical trialSLC38A11
Miscellaneous
canSAR (ICR)SLC38A11 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC38A11
EVEXSLC38A11
GoPubMedSLC38A11
iHOPSLC38A11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:41:18 CEST 2017

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