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SLC38A2 (solute carrier family 38, member 2)

Identity

Other namesATA2
PRO1068
SAT2
SNAT2
HGNC (Hugo) SLC38A2
LocusID (NCBI) 54407
Location 12q13.11
Location_base_pair Starts at 46751971 and ends at 46766645 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SLC38A2   13448
Entrez_Gene (NCBI)SLC38A2  54407  solute carrier family 38, member 2
Cards
GeneCards (Weizmann)SLC38A2
Ensembl (Hinxton)ENSG00000134294 [Gene_View]  chr12:46751971-46766645 [Contig_View]  SLC38A2 [Vega]
AceView (NCBI)SLC38A2
Genatlas (Paris)SLC38A2
SOURCE (Stanford)NM_018976
Genomic and cartography
GoldenPath (UCSC)SLC38A2  -  12q13.11   chr12:46751971-46766645 -  12q13.11   [Description]    (hg19-Feb_2009)
EnsemblSLC38A2 - 12q13.11 [CytoView]
Mapping of homologs : NCBISLC38A2 [Mapview]
OMIM605180   
Gene and transcription
Genbank (Entrez)AB037803 AF116620 AF259799 AF298897 AJ344099
RefSeq transcript (SRS)NM_018976
RefSeq transcript (Entrez)NM_018976
RefSeq genomic (SRS)AC_000144 NC_000012 NC_018923 NT_029419 NW_001838057 NW_004078075
RefSeq genomic (Entrez)AC_000144 NC_000012 NC_018923 NT_029419 NW_001838057 NW_004078075
Consensus coding sequences : CCDS (NCBI)SLC38A2
Cluster EST : UnigeneHs.221847 [ SRS ] Hs.221847 [ NCBI ]
CGAP (NCI)Hs.221847
Alternative Splicing : Fast-db (Paris)GSHG0007400
Alternative Splicing GalleryENSG00000134294
Gene ExpressionSLC38A2 [ NCBI-GEO ]   SLC38A2 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96QD8 (SRS) Q96QD8 (Uniprot)
NextProtQ96QD8
With graphics : InterProQ96QD8
Splice isoforms : SwissVarQ96QD8(Swissvar)
Domains : Interpro (SRS)AA_transpt_TM   
Domains : Interpro (EBI)AA_transpt_TM   
Related proteins : CluSTrQ96QD8
Domain families : Pfam (SRS)Aa_trans (PF01490)   
Domain families : Pfam (Sanger)Aa_trans (PF01490)   
Domain families : Pfam (NCBI)pfam01490   
DMDM54407
Blocks (Seattle)Q96QD8
Human Protein AtlasENSG00000134294
HPRD05535
IPIIPI00410034   IPI00789960   IPI00386439   IPI00032101   IPI01022723   IPI00791146   
Protein Interaction databases
DIP (DOE-UCLA)Q96QD8
IntAct (EBI)Q96QD8
FunCoupENSG00000134294
REACTOMESLC38A2
Protein Interaction Database54407
BioGRIDSLC38A2
InParanoidQ96QD8
Interologous Interaction database Q96QD8
IntegromeDBSLC38A2
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SLC38A2
SNP (GeneSNP Utah)SLC38A2
SNP : HGBaseSLC38A2
Genetic variants : HAPMAPSLC38A2
Somatic Mutations in Cancer : COSMICSLC38A2 
CONAN: Copy Number AnalysisSLC38A2 
Mutations and Diseases : HGMDSLC38A2
OMIM605180   
GENETests605180   
Disease Genetic AssociationSLC38A2
Huge Navigator SLC38A2 [HugePedia]  SLC38A2 [HugeCancerGEM]
Genomic VariantsSLC38A2  SLC38A2 [DGVbeta]
ClinVarSLC38A2
snp3D : Map Gene to Disease54407
General knowledge
Homologs : HomoloGeneSLC38A2
Homology/Alignments : Family Browser (UCSC)SLC38A2
Phylogenetic Trees/Animal Genes : TreeFamSLC38A2
Chemical/Protein Interactions : CTD54407
Chemical/Pharm GKB GenePA37773
Clinical trialSLC38A2
Cancer Resource (Charite)ENSG00000134294
Ontology : AmiGOplasma membrane  ion transport  sodium ion transport  amino acid transport  synaptic transmission  neurotransmitter secretion  glutamate secretion  amino acid transmembrane transporter activity  symporter activity  integral to membrane  transmembrane transport  
Ontology : EGO-EBIplasma membrane  ion transport  sodium ion transport  amino acid transport  synaptic transmission  neurotransmitter secretion  glutamate secretion  amino acid transmembrane transporter activity  symporter activity  integral to membrane  transmembrane transport  
Other databases
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
PubGeneSLC38A2
iHOPSLC38A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:31:15 CEST 2013
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