Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SLC38A2 (solute carrier family 38 member 2)

Identity

Alias_namessolute carrier family 38
Alias_symbol (synonym)SAT2
ATA2
KIAA1382
SNAT2
Other aliasPRO1068
HGNC (Hugo) SLC38A2
LocusID (NCBI) 54407
Atlas_Id 50879
Location 12q13.11  [Link to chromosome band 12q13]
Location_base_pair Starts at 46358188 and ends at 46372862 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GNS (12q14.3) / SLC38A2 (12q13.11)IFNGR1 (6q23.3) / SLC38A2 (12q13.11)JA040725 () / SLC38A2 (12q13.11)
OGG1 (3p25.3) / SLC38A2 (12q13.11)PRKDC (8q11.21) / SLC38A2 (12q13.11)SLC38A2 (12q13.11) / CDC42BPA (1q42.13)
SLC38A2 (12q13.11) / GGNBP2 (17q12)SLC38A2 (12q13.11) / KCNV1 (8q23.2)SLC38A2 (12q13.11) / POR (7q11.23)
SLC38A2 (12q13.11) / SLC38A2 (12q13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC38A2   13448
Cards
Entrez_Gene (NCBI)SLC38A2  54407  solute carrier family 38 member 2
AliasesATA2; PRO1068; SAT2; SNAT2
GeneCards (Weizmann)SLC38A2
Ensembl hg19 (Hinxton)ENSG00000134294 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134294 [Gene_View]  chr12:46358188-46372862 [Contig_View]  SLC38A2 [Vega]
ICGC DataPortalENSG00000134294
TCGA cBioPortalSLC38A2
AceView (NCBI)SLC38A2
Genatlas (Paris)SLC38A2
WikiGenes54407
SOURCE (Princeton)SLC38A2
Genetics Home Reference (NIH)SLC38A2
Genomic and cartography
GoldenPath hg38 (UCSC)SLC38A2  -     chr12:46358188-46372862 -  12q13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC38A2  -     12q13.11   [Description]    (hg19-Feb_2009)
EnsemblSLC38A2 - 12q13.11 [CytoView hg19]  SLC38A2 - 12q13.11 [CytoView hg38]
Mapping of homologs : NCBISLC38A2 [Mapview hg19]  SLC38A2 [Mapview hg38]
OMIM605180   
Gene and transcription
Genbank (Entrez)AB037803 AF116620 AF259799 AF298897 AJ344099
RefSeq transcript (Entrez)NM_001307936 NM_018976
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC38A2
Cluster EST : UnigeneHs.221847 [ NCBI ]
CGAP (NCI)Hs.221847
Alternative Splicing GalleryENSG00000134294
Gene ExpressionSLC38A2 [ NCBI-GEO ]   SLC38A2 [ EBI - ARRAY_EXPRESS ]   SLC38A2 [ SEEK ]   SLC38A2 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC38A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54407
GTEX Portal (Tissue expression)SLC38A2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96QD8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96QD8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96QD8
Splice isoforms : SwissVarQ96QD8
PhosPhoSitePlusQ96QD8
Domains : Interpro (EBI)AA_transpt_TM   
Domain families : Pfam (Sanger)Aa_trans (PF01490)   
Domain families : Pfam (NCBI)pfam01490   
Conserved Domain (NCBI)SLC38A2
DMDM Disease mutations54407
Blocks (Seattle)SLC38A2
SuperfamilyQ96QD8
Human Protein AtlasENSG00000134294
Peptide AtlasQ96QD8
HPRD05535
IPIIPI00410034   IPI00789960   IPI00386439   IPI00032101   IPI01022723   IPI00791146   
Protein Interaction databases
DIP (DOE-UCLA)Q96QD8
IntAct (EBI)Q96QD8
FunCoupENSG00000134294
BioGRIDSLC38A2
STRING (EMBL)SLC38A2
ZODIACSLC38A2
Ontologies - Pathways
QuickGOQ96QD8
Ontology : AmiGOamino acid transmembrane transport  protein binding  plasma membrane  integral component of plasma membrane  brush border  sodium ion transport  amino acid transport  female pregnancy  glutamate secretion  amino acid transmembrane transporter activity  amino acid transmembrane transporter activity  symporter activity  cerebral cortex development  axon  dendrite  glycine betaine transport  alanine transport  cellular response to amino acid starvation  sarcolemma  neuronal cell body  cellular response to mechanical stimulus  
Ontology : EGO-EBIamino acid transmembrane transport  protein binding  plasma membrane  integral component of plasma membrane  brush border  sodium ion transport  amino acid transport  female pregnancy  glutamate secretion  amino acid transmembrane transporter activity  amino acid transmembrane transporter activity  symporter activity  cerebral cortex development  axon  dendrite  glycine betaine transport  alanine transport  cellular response to amino acid starvation  sarcolemma  neuronal cell body  cellular response to mechanical stimulus  
Pathways : KEGGGlutamatergic synapse    GABAergic synapse    Protein digestion and absorption   
NDEx NetworkSLC38A2
Atlas of Cancer Signalling NetworkSLC38A2
Wikipedia pathwaysSLC38A2
Orthology - Evolution
OrthoDB54407
GeneTree (enSembl)ENSG00000134294
Phylogenetic Trees/Animal Genes : TreeFamSLC38A2
HOVERGENQ96QD8
HOGENOMQ96QD8
Homologs : HomoloGeneSLC38A2
Homology/Alignments : Family Browser (UCSC)SLC38A2
Gene fusions - Rearrangements
Fusion Cancer (Beijing)JA040725 [SLC38A2]  -  12q13.11 [FUSC001200]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC38A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC38A2
dbVarSLC38A2
ClinVarSLC38A2
1000_GenomesSLC38A2 
Exome Variant ServerSLC38A2
ExAC (Exome Aggregation Consortium)SLC38A2 (select the gene name)
Genetic variants : HAPMAP54407
Genomic Variants (DGV)SLC38A2 [DGVbeta]
DECIPHERSLC38A2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC38A2 
Mutations
ICGC Data PortalSLC38A2 
TCGA Data PortalSLC38A2 
Broad Tumor PortalSLC38A2
OASIS PortalSLC38A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC38A2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC38A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC38A2
DgiDB (Drug Gene Interaction Database)SLC38A2
DoCM (Curated mutations)SLC38A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC38A2 (select a term)
intoGenSLC38A2
Cancer3DSLC38A2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605180   
Orphanet
MedgenSLC38A2
Genetic Testing Registry SLC38A2
NextProtQ96QD8 [Medical]
TSGene54407
GENETestsSLC38A2
Target ValidationSLC38A2
Huge Navigator SLC38A2 [HugePedia]
snp3D : Map Gene to Disease54407
BioCentury BCIQSLC38A2
ClinGenSLC38A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54407
Chemical/Pharm GKB GenePA37773
Clinical trialSLC38A2
Miscellaneous
canSAR (ICR)SLC38A2 (select the gene name)
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC38A2
EVEXSLC38A2
GoPubMedSLC38A2
iHOPSLC38A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:31:40 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.