Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC38A4 (solute carrier family 38 member 4)

Identity

Alias_namessolute carrier family 38
Alias_symbol (synonym)PAAT
NAT3
ATA3
Other aliasSNAT4
HGNC (Hugo) SLC38A4
LocusID (NCBI) 55089
Atlas_Id 50890
Location 12q13.11  [Link to chromosome band 12q13]
Location_base_pair Starts at 46764761 and ends at 46825997 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC38A4   14679
Cards
Entrez_Gene (NCBI)SLC38A4  55089  solute carrier family 38 member 4
AliasesATA3; NAT3; PAAT; SNAT4
GeneCards (Weizmann)SLC38A4
Ensembl hg19 (Hinxton)ENSG00000139209 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139209 [Gene_View]  chr12:46764761-46825997 [Contig_View]  SLC38A4 [Vega]
ICGC DataPortalENSG00000139209
TCGA cBioPortalSLC38A4
AceView (NCBI)SLC38A4
Genatlas (Paris)SLC38A4
WikiGenes55089
SOURCE (Princeton)SLC38A4
Genetics Home Reference (NIH)SLC38A4
Genomic and cartography
GoldenPath hg38 (UCSC)SLC38A4  -     chr12:46764761-46825997 -  12q13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC38A4  -     12q13.11   [Description]    (hg19-Feb_2009)
EnsemblSLC38A4 - 12q13.11 [CytoView hg19]  SLC38A4 - 12q13.11 [CytoView hg38]
Mapping of homologs : NCBISLC38A4 [Mapview hg19]  SLC38A4 [Mapview hg38]
OMIM608065   
Gene and transcription
Genbank (Entrez)AB055003 AF193836 AF305814 AK001053 AK291168
RefSeq transcript (Entrez)NM_001143824 NM_018018
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC38A4
Cluster EST : UnigeneHs.446077 [ NCBI ]
CGAP (NCI)Hs.446077
Alternative Splicing GalleryENSG00000139209
Gene ExpressionSLC38A4 [ NCBI-GEO ]   SLC38A4 [ EBI - ARRAY_EXPRESS ]   SLC38A4 [ SEEK ]   SLC38A4 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC38A4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55089
GTEX Portal (Tissue expression)SLC38A4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969I6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969I6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969I6
Splice isoforms : SwissVarQ969I6
PhosPhoSitePlusQ969I6
Domains : Interpro (EBI)AA_transpt_TM   
Domain families : Pfam (Sanger)Aa_trans (PF01490)   
Domain families : Pfam (NCBI)pfam01490   
Conserved Domain (NCBI)SLC38A4
DMDM Disease mutations55089
Blocks (Seattle)SLC38A4
SuperfamilyQ969I6
Human Protein AtlasENSG00000139209
Peptide AtlasQ969I6
HPRD12159
IPIIPI00100002   IPI00789766   IPI01022763   IPI01021958   IPI01022204   
Protein Interaction databases
DIP (DOE-UCLA)Q969I6
IntAct (EBI)Q969I6
FunCoupENSG00000139209
BioGRIDSLC38A4
STRING (EMBL)SLC38A4
ZODIACSLC38A4
Ontologies - Pathways
QuickGOQ969I6
Ontology : AmiGOamino acid transmembrane transport  plasma membrane  integral component of plasma membrane  sodium ion transport  amino acid transport  amino acid transmembrane transporter activity  amino acid transmembrane transporter activity  symporter activity  
Ontology : EGO-EBIamino acid transmembrane transport  plasma membrane  integral component of plasma membrane  sodium ion transport  amino acid transport  amino acid transmembrane transporter activity  amino acid transmembrane transporter activity  symporter activity  
NDEx NetworkSLC38A4
Atlas of Cancer Signalling NetworkSLC38A4
Wikipedia pathwaysSLC38A4
Orthology - Evolution
OrthoDB55089
GeneTree (enSembl)ENSG00000139209
Phylogenetic Trees/Animal Genes : TreeFamSLC38A4
HOVERGENQ969I6
HOGENOMQ969I6
Homologs : HomoloGeneSLC38A4
Homology/Alignments : Family Browser (UCSC)SLC38A4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC38A4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC38A4
dbVarSLC38A4
ClinVarSLC38A4
1000_GenomesSLC38A4 
Exome Variant ServerSLC38A4
ExAC (Exome Aggregation Consortium)SLC38A4 (select the gene name)
Genetic variants : HAPMAP55089
Genomic Variants (DGV)SLC38A4 [DGVbeta]
DECIPHERSLC38A4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC38A4 
Mutations
ICGC Data PortalSLC38A4 
TCGA Data PortalSLC38A4 
Broad Tumor PortalSLC38A4
OASIS PortalSLC38A4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC38A4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC38A4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC38A4
DgiDB (Drug Gene Interaction Database)SLC38A4
DoCM (Curated mutations)SLC38A4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC38A4 (select a term)
intoGenSLC38A4
Cancer3DSLC38A4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608065   
Orphanet
MedgenSLC38A4
Genetic Testing Registry SLC38A4
NextProtQ969I6 [Medical]
TSGene55089
GENETestsSLC38A4
Target ValidationSLC38A4
Huge Navigator SLC38A4 [HugePedia]
snp3D : Map Gene to Disease55089
BioCentury BCIQSLC38A4
ClinGenSLC38A4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55089
Chemical/Pharm GKB GenePA37908
Clinical trialSLC38A4
Miscellaneous
canSAR (ICR)SLC38A4 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC38A4
EVEXSLC38A4
GoPubMedSLC38A4
iHOPSLC38A4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:56:08 CEST 2017

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