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SLC38A5 (solute carrier family 38, member 5)

Identity

Alias_namessolute carrier family 38, member 5
Alias_symbol (synonym)SN2
JM24
Other aliasSNAT5
pp7194
HGNC (Hugo) SLC38A5
LocusID (NCBI) 92745
Atlas_Id 73425
Location Xp11.23  [Link to chromosome band Xp11]
Location_base_pair Starts at 48316920 and ends at 48328644 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CTNNB1 (3p22.1) / SLC38A5 (Xp11.23)SLC38A5 (Xp11.23) / MRPS34 (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC38A5   18070
Cards
Entrez_Gene (NCBI)SLC38A5  92745  solute carrier family 38, member 5
AliasesJM24; SN2; SNAT5; pp7194
GeneCards (Weizmann)SLC38A5
Ensembl hg19 (Hinxton)ENSG00000017483 [Gene_View]  chrX:48316920-48328644 [Contig_View]  SLC38A5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000017483 [Gene_View]  chrX:48316920-48328644 [Contig_View]  SLC38A5 [Vega]
ICGC DataPortalENSG00000017483
TCGA cBioPortalSLC38A5
AceView (NCBI)SLC38A5
Genatlas (Paris)SLC38A5
WikiGenes92745
SOURCE (Princeton)SLC38A5
Genetics Home Reference (NIH)SLC38A5
Genomic and cartography
GoldenPath hg19 (UCSC)SLC38A5  -     chrX:48316920-48328644 -  Xp11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC38A5  -     Xp11.23   [Description]    (hg38-Dec_2013)
EnsemblSLC38A5 - Xp11.23 [CytoView hg19]  SLC38A5 - Xp11.23 [CytoView hg38]
Mapping of homologs : NCBISLC38A5 [Mapview hg19]  SLC38A5 [Mapview hg38]
OMIM300649   
Gene and transcription
Genbank (Entrez)AF276889 AF318358 AK094788 AW183216 BC019246
RefSeq transcript (Entrez)NM_033518
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_021469 NT_079573 NW_004929439
Consensus coding sequences : CCDS (NCBI)SLC38A5
Cluster EST : UnigeneHs.195155 [ NCBI ]
CGAP (NCI)Hs.195155
Alternative Splicing GalleryENSG00000017483
Gene ExpressionSLC38A5 [ NCBI-GEO ]   SLC38A5 [ EBI - ARRAY_EXPRESS ]   SLC38A5 [ SEEK ]   SLC38A5 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC38A5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92745
GTEX Portal (Tissue expression)SLC38A5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WUX1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WUX1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WUX1
Splice isoforms : SwissVarQ8WUX1
PhosPhoSitePlusQ8WUX1
Domains : Interpro (EBI)AA_transpt_TM   
Domain families : Pfam (Sanger)Aa_trans (PF01490)   
Domain families : Pfam (NCBI)pfam01490   
Conserved Domain (NCBI)SLC38A5
DMDM Disease mutations92745
Blocks (Seattle)SLC38A5
SuperfamilyQ8WUX1
Human Protein AtlasENSG00000017483
Peptide AtlasQ8WUX1
HPRD06718
IPIIPI00102509   IPI00641465   IPI00642802   IPI00642239   IPI00645693   IPI00645225   IPI00646521   
Protein Interaction databases
DIP (DOE-UCLA)Q8WUX1
IntAct (EBI)Q8WUX1
FunCoupENSG00000017483
BioGRIDSLC38A5
STRING (EMBL)SLC38A5
ZODIACSLC38A5
Ontologies - Pathways
QuickGOQ8WUX1
Ontology : AmiGOamino acid transmembrane transport  plasma membrane  integral component of plasma membrane  ion transport  amino acid transport  glycine transmembrane transporter activity  glycine transport  transmembrane transport  
Ontology : EGO-EBIamino acid transmembrane transport  plasma membrane  integral component of plasma membrane  ion transport  amino acid transport  glycine transmembrane transporter activity  glycine transport  transmembrane transport  
Pathways : KEGGGABAergic synapse   
NDEx NetworkSLC38A5
Atlas of Cancer Signalling NetworkSLC38A5
Wikipedia pathwaysSLC38A5
Orthology - Evolution
OrthoDB92745
GeneTree (enSembl)ENSG00000017483
Phylogenetic Trees/Animal Genes : TreeFamSLC38A5
HOVERGENQ8WUX1
HOGENOMQ8WUX1
Homologs : HomoloGeneSLC38A5
Homology/Alignments : Family Browser (UCSC)SLC38A5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC38A5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC38A5
dbVarSLC38A5
ClinVarSLC38A5
1000_GenomesSLC38A5 
Exome Variant ServerSLC38A5
ExAC (Exome Aggregation Consortium)SLC38A5 (select the gene name)
Genetic variants : HAPMAP92745
Genomic Variants (DGV)SLC38A5 [DGVbeta]
DECIPHER (Syndromes)X:48316920-48328644  ENSG00000017483
CONAN: Copy Number AnalysisSLC38A5 
Mutations
ICGC Data PortalSLC38A5 
TCGA Data PortalSLC38A5 
Broad Tumor PortalSLC38A5
OASIS PortalSLC38A5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC38A5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC38A5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch SLC38A5
DgiDB (Drug Gene Interaction Database)SLC38A5
DoCM (Curated mutations)SLC38A5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC38A5 (select a term)
intoGenSLC38A5
Cancer3DSLC38A5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300649   
Orphanet
MedgenSLC38A5
Genetic Testing Registry SLC38A5
NextProtQ8WUX1 [Medical]
TSGene92745
GENETestsSLC38A5
Huge Navigator SLC38A5 [HugePedia]
snp3D : Map Gene to Disease92745
BioCentury BCIQSLC38A5
ClinGenSLC38A5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92745
Chemical/Pharm GKB GenePA38289
Clinical trialSLC38A5
Miscellaneous
canSAR (ICR)SLC38A5 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC38A5
EVEXSLC38A5
GoPubMedSLC38A5
iHOPSLC38A5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:43:45 CET 2017

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