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SLC38A6 (solute carrier family 38 member 6)

Identity

Alias_namessolute carrier family 38, member 6
Alias_symbol (synonym)NAT-1
Other aliasSNAT6
HGNC (Hugo) SLC38A6
LocusID (NCBI) 145389
Atlas_Id 73426
Location 14q23.1  [Link to chromosome band 14q23]
Location_base_pair Starts at 60981114 and ends at 61083733 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SLC38A6 (14q23.1) / HNRNPAB (5q35.3)TANK (2q24.2) / SLC38A6 (14q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC38A6   19863
Cards
Entrez_Gene (NCBI)SLC38A6  145389  solute carrier family 38 member 6
AliasesNAT-1; SNAT6
GeneCards (Weizmann)SLC38A6
Ensembl hg19 (Hinxton)ENSG00000139974 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139974 [Gene_View]  chr14:60981114-61083733 [Contig_View]  SLC38A6 [Vega]
ICGC DataPortalENSG00000139974
TCGA cBioPortalSLC38A6
AceView (NCBI)SLC38A6
Genatlas (Paris)SLC38A6
WikiGenes145389
SOURCE (Princeton)SLC38A6
Genetics Home Reference (NIH)SLC38A6
Genomic and cartography
GoldenPath hg38 (UCSC)SLC38A6  -     chr14:60981114-61083733 +  14q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC38A6  -     14q23.1   [Description]    (hg19-Feb_2009)
EnsemblSLC38A6 - 14q23.1 [CytoView hg19]  SLC38A6 - 14q23.1 [CytoView hg38]
Mapping of homologs : NCBISLC38A6 [Mapview hg19]  SLC38A6 [Mapview hg38]
OMIM616518   
Gene and transcription
Genbank (Entrez)AF070578 AF543422 AK303839 BC050349 BC064429
RefSeq transcript (Entrez)NM_001172702 NM_153811
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC38A6
Cluster EST : UnigeneHs.200738 [ NCBI ]
CGAP (NCI)Hs.200738
Alternative Splicing GalleryENSG00000139974
Gene ExpressionSLC38A6 [ NCBI-GEO ]   SLC38A6 [ EBI - ARRAY_EXPRESS ]   SLC38A6 [ SEEK ]   SLC38A6 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC38A6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)145389
GTEX Portal (Tissue expression)SLC38A6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZM9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZM9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZM9
Splice isoforms : SwissVarQ8IZM9
PhosPhoSitePlusQ8IZM9
Domains : Interpro (EBI)AA_transpt_TM   
Domain families : Pfam (Sanger)Aa_trans (PF01490)   
Domain families : Pfam (NCBI)pfam01490   
Conserved Domain (NCBI)SLC38A6
DMDM Disease mutations145389
Blocks (Seattle)SLC38A6
SuperfamilyQ8IZM9
Human Protein AtlasENSG00000139974
Peptide AtlasQ8IZM9
HPRD15382
IPIIPI00218028   IPI00384040   IPI00910105   IPI01024805   IPI01024946   IPI00980191   IPI00979680   IPI00981490   IPI00982318   IPI00981007   IPI00982827   
Protein Interaction databases
DIP (DOE-UCLA)Q8IZM9
IntAct (EBI)Q8IZM9
FunCoupENSG00000139974
BioGRIDSLC38A6
STRING (EMBL)SLC38A6
ZODIACSLC38A6
Ontologies - Pathways
QuickGOQ8IZM9
Ontology : AmiGOamino acid transmembrane transport  plasma membrane  integral component of plasma membrane  sodium ion transport  amino acid transmembrane transporter activity  
Ontology : EGO-EBIamino acid transmembrane transport  plasma membrane  integral component of plasma membrane  sodium ion transport  amino acid transmembrane transporter activity  
NDEx NetworkSLC38A6
Atlas of Cancer Signalling NetworkSLC38A6
Wikipedia pathwaysSLC38A6
Orthology - Evolution
OrthoDB145389
GeneTree (enSembl)ENSG00000139974
Phylogenetic Trees/Animal Genes : TreeFamSLC38A6
HOVERGENQ8IZM9
HOGENOMQ8IZM9
Homologs : HomoloGeneSLC38A6
Homology/Alignments : Family Browser (UCSC)SLC38A6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC38A6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC38A6
dbVarSLC38A6
ClinVarSLC38A6
1000_GenomesSLC38A6 
Exome Variant ServerSLC38A6
ExAC (Exome Aggregation Consortium)SLC38A6 (select the gene name)
Genetic variants : HAPMAP145389
Genomic Variants (DGV)SLC38A6 [DGVbeta]
DECIPHERSLC38A6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC38A6 
Mutations
ICGC Data PortalSLC38A6 
TCGA Data PortalSLC38A6 
Broad Tumor PortalSLC38A6
OASIS PortalSLC38A6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC38A6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC38A6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC38A6
DgiDB (Drug Gene Interaction Database)SLC38A6
DoCM (Curated mutations)SLC38A6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC38A6 (select a term)
intoGenSLC38A6
Cancer3DSLC38A6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616518   
Orphanet
MedgenSLC38A6
Genetic Testing Registry SLC38A6
NextProtQ8IZM9 [Medical]
TSGene145389
GENETestsSLC38A6
Target ValidationSLC38A6
Huge Navigator SLC38A6 [HugePedia]
snp3D : Map Gene to Disease145389
BioCentury BCIQSLC38A6
ClinGenSLC38A6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD145389
Chemical/Pharm GKB GenePA134932150
Clinical trialSLC38A6
Miscellaneous
canSAR (ICR)SLC38A6 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC38A6
EVEXSLC38A6
GoPubMedSLC38A6
iHOPSLC38A6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:41:18 CEST 2017

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