Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC38A7 (solute carrier family 38 member 7)

Identity

Alias_namessolute carrier family 38, member 7
Alias_symbol (synonym)FLJ10815
Other aliasSNAT7
HGNC (Hugo) SLC38A7
LocusID (NCBI) 55238
Atlas_Id 73427
Location 16q21  [Link to chromosome band 16q21]
Location_base_pair Starts at 58665109 and ends at 58684707 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARF3 (12q13.12) / SLC38A7 (16q21)SLC38A7 (16q21) / AXL (19q13.2)SLC38A7 (16q21) / GOT2 (16q21)
SLC38A7 (16q21) / ZNF853 (7p22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC38A7   25582
Cards
Entrez_Gene (NCBI)SLC38A7  55238  solute carrier family 38 member 7
AliasesSNAT7
GeneCards (Weizmann)SLC38A7
Ensembl hg19 (Hinxton)ENSG00000103042 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103042 [Gene_View]  chr16:58665109-58684707 [Contig_View]  SLC38A7 [Vega]
ICGC DataPortalENSG00000103042
TCGA cBioPortalSLC38A7
AceView (NCBI)SLC38A7
Genatlas (Paris)SLC38A7
WikiGenes55238
SOURCE (Princeton)SLC38A7
Genetics Home Reference (NIH)SLC38A7
Genomic and cartography
GoldenPath hg38 (UCSC)SLC38A7  -     chr16:58665109-58684707 -  16q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC38A7  -     16q21   [Description]    (hg19-Feb_2009)
EnsemblSLC38A7 - 16q21 [CytoView hg19]  SLC38A7 - 16q21 [CytoView hg38]
Mapping of homologs : NCBISLC38A7 [Mapview hg19]  SLC38A7 [Mapview hg38]
OMIM614236   
Gene and transcription
Genbank (Entrez)AI201677 AK001677 AK022786 AK222932 AK299424
RefSeq transcript (Entrez)NM_001308384 NM_018231
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC38A7
Cluster EST : UnigeneHs.593499 [ NCBI ]
CGAP (NCI)Hs.593499
Alternative Splicing GalleryENSG00000103042
Gene ExpressionSLC38A7 [ NCBI-GEO ]   SLC38A7 [ EBI - ARRAY_EXPRESS ]   SLC38A7 [ SEEK ]   SLC38A7 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC38A7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55238
GTEX Portal (Tissue expression)SLC38A7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NVC3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NVC3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NVC3
Splice isoforms : SwissVarQ9NVC3
PhosPhoSitePlusQ9NVC3
Domains : Interpro (EBI)AA_transpt_TM   
Domain families : Pfam (Sanger)Aa_trans (PF01490)   
Domain families : Pfam (NCBI)pfam01490   
Conserved Domain (NCBI)SLC38A7
DMDM Disease mutations55238
Blocks (Seattle)SLC38A7
SuperfamilyQ9NVC3
Human Protein AtlasENSG00000103042
Peptide AtlasQ9NVC3
HPRD07701
IPIIPI00019349   IPI00885114   
Protein Interaction databases
DIP (DOE-UCLA)Q9NVC3
IntAct (EBI)Q9NVC3
FunCoupENSG00000103042
BioGRIDSLC38A7
STRING (EMBL)SLC38A7
ZODIACSLC38A7
Ontologies - Pathways
QuickGOQ9NVC3
Ontology : AmiGOL-histidine transmembrane transporter activity  L-glutamate transmembrane transporter activity  protein binding  sodium ion transport  asparagine transport  glutamine transport  L-amino acid transmembrane transporter activity  L-alanine transmembrane transporter activity  L-asparagine transmembrane transporter activity  L-aspartate transmembrane transporter activity  L-glutamine transmembrane transporter activity  L-glutamine transmembrane transporter activity  L-leucine transmembrane transporter activity  L-methionine transmembrane transporter activity  L-serine transmembrane transporter activity  branched-chain amino acid transport  L-alanine transport  aspartate transport  methionine transport  L-serine transport  integral component of membrane  axon  neuronal cell body  L-histidine transmembrane transport  L-glutamate transmembrane transport  L-aspartate transmembrane transport  
Ontology : EGO-EBIL-histidine transmembrane transporter activity  L-glutamate transmembrane transporter activity  protein binding  sodium ion transport  asparagine transport  glutamine transport  L-amino acid transmembrane transporter activity  L-alanine transmembrane transporter activity  L-asparagine transmembrane transporter activity  L-aspartate transmembrane transporter activity  L-glutamine transmembrane transporter activity  L-glutamine transmembrane transporter activity  L-leucine transmembrane transporter activity  L-methionine transmembrane transporter activity  L-serine transmembrane transporter activity  branched-chain amino acid transport  L-alanine transport  aspartate transport  methionine transport  L-serine transport  integral component of membrane  axon  neuronal cell body  L-histidine transmembrane transport  L-glutamate transmembrane transport  L-aspartate transmembrane transport  
NDEx NetworkSLC38A7
Atlas of Cancer Signalling NetworkSLC38A7
Wikipedia pathwaysSLC38A7
Orthology - Evolution
OrthoDB55238
GeneTree (enSembl)ENSG00000103042
Phylogenetic Trees/Animal Genes : TreeFamSLC38A7
HOVERGENQ9NVC3
HOGENOMQ9NVC3
Homologs : HomoloGeneSLC38A7
Homology/Alignments : Family Browser (UCSC)SLC38A7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC38A7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC38A7
dbVarSLC38A7
ClinVarSLC38A7
1000_GenomesSLC38A7 
Exome Variant ServerSLC38A7
ExAC (Exome Aggregation Consortium)SLC38A7 (select the gene name)
Genetic variants : HAPMAP55238
Genomic Variants (DGV)SLC38A7 [DGVbeta]
DECIPHERSLC38A7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC38A7 
Mutations
ICGC Data PortalSLC38A7 
TCGA Data PortalSLC38A7 
Broad Tumor PortalSLC38A7
OASIS PortalSLC38A7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC38A7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC38A7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC38A7
DgiDB (Drug Gene Interaction Database)SLC38A7
DoCM (Curated mutations)SLC38A7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC38A7 (select a term)
intoGenSLC38A7
Cancer3DSLC38A7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614236   
Orphanet
MedgenSLC38A7
Genetic Testing Registry SLC38A7
NextProtQ9NVC3 [Medical]
TSGene55238
GENETestsSLC38A7
Target ValidationSLC38A7
Huge Navigator SLC38A7 [HugePedia]
snp3D : Map Gene to Disease55238
BioCentury BCIQSLC38A7
ClinGenSLC38A7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55238
Chemical/Pharm GKB GenePA162403772
Clinical trialSLC38A7
Miscellaneous
canSAR (ICR)SLC38A7 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC38A7
EVEXSLC38A7
GoPubMedSLC38A7
iHOPSLC38A7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:41:18 CEST 2017

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