Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SLC38A8 (solute carrier family 38 member 8)

Identity

Alias_namessolute carrier family 38, member 8
Other aliasFVH2
HGNC (Hugo) SLC38A8
LocusID (NCBI) 146167
Atlas_Id 73428
Location 16q23.3  [Link to chromosome band 16q23]
Location_base_pair Starts at 84009667 and ends at 84042157 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC38A8   32434
Cards
Entrez_Gene (NCBI)SLC38A8  146167  solute carrier family 38 member 8
AliasesFVH2
GeneCards (Weizmann)SLC38A8
Ensembl hg19 (Hinxton)ENSG00000166558 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166558 [Gene_View]  chr16:84009667-84042157 [Contig_View]  SLC38A8 [Vega]
ICGC DataPortalENSG00000166558
TCGA cBioPortalSLC38A8
AceView (NCBI)SLC38A8
Genatlas (Paris)SLC38A8
WikiGenes146167
SOURCE (Princeton)SLC38A8
Genetics Home Reference (NIH)SLC38A8
Genomic and cartography
GoldenPath hg38 (UCSC)SLC38A8  -     chr16:84009667-84042157 -  16q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC38A8  -     16q23.3   [Description]    (hg19-Feb_2009)
EnsemblSLC38A8 - 16q23.3 [CytoView hg19]  SLC38A8 - 16q23.3 [CytoView hg38]
Mapping of homologs : NCBISLC38A8 [Mapview hg19]  SLC38A8 [Mapview hg38]
OMIM609218   615585   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001080442
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC38A8
Alternative Splicing GalleryENSG00000166558
Gene ExpressionSLC38A8 [ NCBI-GEO ]   SLC38A8 [ EBI - ARRAY_EXPRESS ]   SLC38A8 [ SEEK ]   SLC38A8 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC38A8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)146167
GTEX Portal (Tissue expression)SLC38A8
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NNN8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NNN8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NNN8
Splice isoforms : SwissVarA6NNN8
PhosPhoSitePlusA6NNN8
Domains : Interpro (EBI)AA_transpt_TM   
Domain families : Pfam (Sanger)Aa_trans (PF01490)   
Domain families : Pfam (NCBI)pfam01490   
Conserved Domain (NCBI)SLC38A8
DMDM Disease mutations146167
Blocks (Seattle)SLC38A8
SuperfamilyA6NNN8
Human Protein AtlasENSG00000166558
Peptide AtlasA6NNN8
IPIIPI00094624   
Protein Interaction databases
DIP (DOE-UCLA)A6NNN8
IntAct (EBI)A6NNN8
FunCoupENSG00000166558
BioGRIDSLC38A8
STRING (EMBL)SLC38A8
ZODIACSLC38A8
Ontologies - Pathways
QuickGOA6NNN8
Ontology : AmiGOamino acid transmembrane transport  sodium ion transport  amino acid transmembrane transporter activity  integral component of membrane  
Ontology : EGO-EBIamino acid transmembrane transport  sodium ion transport  amino acid transmembrane transporter activity  integral component of membrane  
NDEx NetworkSLC38A8
Atlas of Cancer Signalling NetworkSLC38A8
Wikipedia pathwaysSLC38A8
Orthology - Evolution
OrthoDB146167
GeneTree (enSembl)ENSG00000166558
Phylogenetic Trees/Animal Genes : TreeFamSLC38A8
HOVERGENA6NNN8
HOGENOMA6NNN8
Homologs : HomoloGeneSLC38A8
Homology/Alignments : Family Browser (UCSC)SLC38A8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC38A8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC38A8
dbVarSLC38A8
ClinVarSLC38A8
1000_GenomesSLC38A8 
Exome Variant ServerSLC38A8
ExAC (Exome Aggregation Consortium)SLC38A8 (select the gene name)
Genetic variants : HAPMAP146167
Genomic Variants (DGV)SLC38A8 [DGVbeta]
DECIPHERSLC38A8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC38A8 
Mutations
ICGC Data PortalSLC38A8 
TCGA Data PortalSLC38A8 
Broad Tumor PortalSLC38A8
OASIS PortalSLC38A8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC38A8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC38A8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC38A8
DgiDB (Drug Gene Interaction Database)SLC38A8
DoCM (Curated mutations)SLC38A8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC38A8 (select a term)
intoGenSLC38A8
Cancer3DSLC38A8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609218    615585   
Orphanet22689   
MedgenSLC38A8
Genetic Testing Registry SLC38A8
NextProtA6NNN8 [Medical]
TSGene146167
GENETestsSLC38A8
Target ValidationSLC38A8
Huge Navigator SLC38A8 [HugePedia]
snp3D : Map Gene to Disease146167
BioCentury BCIQSLC38A8
ClinGenSLC38A8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD146167
Chemical/Pharm GKB GenePA162403773
Clinical trialSLC38A8
Miscellaneous
canSAR (ICR)SLC38A8 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC38A8
EVEXSLC38A8
GoPubMedSLC38A8
iHOPSLC38A8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:38:12 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.