Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC38A9 (solute carrier family 38 member 9)

Identity

Alias_namessolute carrier family 38, member 9
Alias_symbol (synonym)FLJ90709
Other aliasURLC11
HGNC (Hugo) SLC38A9
LocusID (NCBI) 153129
Atlas_Id 73429
Location 5q11.2  [Link to chromosome band 5q11]
Location_base_pair Starts at 55625845 and ends at 55693053 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CTNNA1 (5q31.2) / SLC38A9 (5q11.2)SLC38A9 (5q11.2) / KCNIP1 (5q35.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC38A9   26907
Cards
Entrez_Gene (NCBI)SLC38A9  153129  solute carrier family 38 member 9
AliasesURLC11
GeneCards (Weizmann)SLC38A9
Ensembl hg19 (Hinxton)ENSG00000177058 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177058 [Gene_View]  chr5:55625845-55693053 [Contig_View]  SLC38A9 [Vega]
ICGC DataPortalENSG00000177058
TCGA cBioPortalSLC38A9
AceView (NCBI)SLC38A9
Genatlas (Paris)SLC38A9
WikiGenes153129
SOURCE (Princeton)SLC38A9
Genetics Home Reference (NIH)SLC38A9
Genomic and cartography
GoldenPath hg38 (UCSC)SLC38A9  -     chr5:55625845-55693053 -  5q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC38A9  -     5q11.2   [Description]    (hg19-Feb_2009)
EnsemblSLC38A9 - 5q11.2 [CytoView hg19]  SLC38A9 - 5q11.2 [CytoView hg38]
Mapping of homologs : NCBISLC38A9 [Mapview hg19]  SLC38A9 [Mapview hg38]
OMIM616203   
Gene and transcription
Genbank (Entrez)AB105188 AI580489 AK075190 AK122957 AK127988
RefSeq transcript (Entrez)NM_001258286 NM_001258287 NM_001282429 NM_001349382 NM_001349383 NM_001349384 NM_001349385 NM_173514
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC38A9
Cluster EST : UnigeneHs.745105 [ NCBI ]
CGAP (NCI)Hs.745105
Alternative Splicing GalleryENSG00000177058
Gene ExpressionSLC38A9 [ NCBI-GEO ]   SLC38A9 [ EBI - ARRAY_EXPRESS ]   SLC38A9 [ SEEK ]   SLC38A9 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC38A9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)153129
GTEX Portal (Tissue expression)SLC38A9
Human Protein AtlasENSG00000177058-SLC38A9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NBW4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NBW4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NBW4
Splice isoforms : SwissVarQ8NBW4
PhosPhoSitePlusQ8NBW4
Domains : Interpro (EBI)AA_transpt_TM   
Domain families : Pfam (Sanger)Aa_trans (PF01490)   
Domain families : Pfam (NCBI)pfam01490   
Conserved Domain (NCBI)SLC38A9
DMDM Disease mutations153129
Blocks (Seattle)SLC38A9
SuperfamilyQ8NBW4
Human Protein Atlas [tissue]ENSG00000177058-SLC38A9 [tissue]
Peptide AtlasQ8NBW4
HPRD08817
IPIIPI00168340   IPI00889635   IPI00965028   IPI00965808   IPI00903111   IPI00967400   IPI00964618   IPI00966197   IPI00967063   IPI00968232   IPI00966513   IPI00966739   IPI00967736   IPI00966729   
Protein Interaction databases
DIP (DOE-UCLA)Q8NBW4
IntAct (EBI)Q8NBW4
FunCoupENSG00000177058
BioGRIDSLC38A9
STRING (EMBL)SLC38A9
ZODIACSLC38A9
Ontologies - Pathways
QuickGOQ8NBW4
Ontology : AmiGOamino acid transmembrane transport  protein binding  nucleoplasm  lysosome  lysosomal membrane  late endosome  amino acid transmembrane transporter activity  integral component of membrane  positive regulation of TOR signaling  intracellular membrane-bounded organelle  cellular response to amino acid stimulus  Ragulator complex  
Ontology : EGO-EBIamino acid transmembrane transport  protein binding  nucleoplasm  lysosome  lysosomal membrane  late endosome  amino acid transmembrane transporter activity  integral component of membrane  positive regulation of TOR signaling  intracellular membrane-bounded organelle  cellular response to amino acid stimulus  Ragulator complex  
NDEx NetworkSLC38A9
Atlas of Cancer Signalling NetworkSLC38A9
Wikipedia pathwaysSLC38A9
Orthology - Evolution
OrthoDB153129
GeneTree (enSembl)ENSG00000177058
Phylogenetic Trees/Animal Genes : TreeFamSLC38A9
HOVERGENQ8NBW4
HOGENOMQ8NBW4
Homologs : HomoloGeneSLC38A9
Homology/Alignments : Family Browser (UCSC)SLC38A9
Gene fusions - Rearrangements
Tumor Fusion PortalSLC38A9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC38A9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC38A9
dbVarSLC38A9
ClinVarSLC38A9
1000_GenomesSLC38A9 
Exome Variant ServerSLC38A9
ExAC (Exome Aggregation Consortium)ENSG00000177058
GNOMAD BrowserENSG00000177058
Genetic variants : HAPMAP153129
Genomic Variants (DGV)SLC38A9 [DGVbeta]
DECIPHERSLC38A9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC38A9 
Mutations
ICGC Data PortalSLC38A9 
TCGA Data PortalSLC38A9 
Broad Tumor PortalSLC38A9
OASIS PortalSLC38A9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC38A9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC38A9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC38A9
DgiDB (Drug Gene Interaction Database)SLC38A9
DoCM (Curated mutations)SLC38A9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC38A9 (select a term)
intoGenSLC38A9
Cancer3DSLC38A9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616203   
Orphanet
DisGeNETSLC38A9
MedgenSLC38A9
Genetic Testing Registry SLC38A9
NextProtQ8NBW4 [Medical]
TSGene153129
GENETestsSLC38A9
Target ValidationSLC38A9
Huge Navigator SLC38A9 [HugePedia]
snp3D : Map Gene to Disease153129
BioCentury BCIQSLC38A9
ClinGenSLC38A9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD153129
Chemical/Pharm GKB GenePA162403774
Clinical trialSLC38A9
Miscellaneous
canSAR (ICR)SLC38A9 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC38A9
EVEXSLC38A9
GoPubMedSLC38A9
iHOPSLC38A9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:13:03 CET 2017

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