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SLC39A10 (solute carrier family 39 member 10)

Identity

Alias_namessolute carrier family 39 (metal ion transporter), member 10
solute carrier family 39 (zinc transporter), member 10
Alias_symbol (synonym)KIAA1265
FLJ90515
DKFZp564L2123
Other aliasLZT-Hs2
HGNC (Hugo) SLC39A10
LocusID (NCBI) 57181
Atlas_Id 54968
Location 2q32.3  [Link to chromosome band 2q32]
Location_base_pair Starts at 195656808 and ends at 195737702 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FAM126B (2q33.1) / SLC39A10 (2q32.3)SERINC1 (6q22.31) / SLC39A10 (2q32.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC39A10   20861
Cards
Entrez_Gene (NCBI)SLC39A10  57181  solute carrier family 39 member 10
AliasesLZT-Hs2
GeneCards (Weizmann)SLC39A10
Ensembl hg19 (Hinxton)ENSG00000196950 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196950 [Gene_View]  chr2:195656808-195737702 [Contig_View]  SLC39A10 [Vega]
ICGC DataPortalENSG00000196950
TCGA cBioPortalSLC39A10
AceView (NCBI)SLC39A10
Genatlas (Paris)SLC39A10
WikiGenes57181
SOURCE (Princeton)SLC39A10
Genetics Home Reference (NIH)SLC39A10
Genomic and cartography
GoldenPath hg38 (UCSC)SLC39A10  -     chr2:195656808-195737702 +  2q32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC39A10  -     2q32.3   [Description]    (hg19-Feb_2009)
EnsemblSLC39A10 - 2q32.3 [CytoView hg19]  SLC39A10 - 2q32.3 [CytoView hg38]
Mapping of homologs : NCBISLC39A10 [Mapview hg19]  SLC39A10 [Mapview hg38]
OMIM608733   
Gene and transcription
Genbank (Entrez)AB033091 AI693720 AK074996 AK291241 AK294771
RefSeq transcript (Entrez)NM_001127257 NM_020342
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC39A10
Cluster EST : UnigeneHs.650158 [ NCBI ]
CGAP (NCI)Hs.650158
Alternative Splicing GalleryENSG00000196950
Gene ExpressionSLC39A10 [ NCBI-GEO ]   SLC39A10 [ EBI - ARRAY_EXPRESS ]   SLC39A10 [ SEEK ]   SLC39A10 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC39A10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57181
GTEX Portal (Tissue expression)SLC39A10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULF5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9ULF5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9ULF5
Splice isoforms : SwissVarQ9ULF5
PhosPhoSitePlusQ9ULF5
Domains : Interpro (EBI)ZIP   
Domain families : Pfam (Sanger)Zip (PF02535)   
Domain families : Pfam (NCBI)pfam02535   
Conserved Domain (NCBI)SLC39A10
DMDM Disease mutations57181
Blocks (Seattle)SLC39A10
SuperfamilyQ9ULF5
Human Protein AtlasENSG00000196950
Peptide AtlasQ9ULF5
HPRD10572
IPIIPI00008085   IPI01014847   IPI00916855   IPI00916039   IPI00917141   IPI00916454   IPI00952961   
Protein Interaction databases
DIP (DOE-UCLA)Q9ULF5
IntAct (EBI)Q9ULF5
FunCoupENSG00000196950
BioGRIDSLC39A10
STRING (EMBL)SLC39A10
ZODIACSLC39A10
Ontologies - Pathways
QuickGOQ9ULF5
Ontology : AmiGOnegative regulation of B cell apoptotic process  zinc ion transmembrane transporter activity  integral component of plasma membrane  cellular zinc ion homeostasis  positive regulation of B cell proliferation  positive regulation of B cell receptor signaling pathway  zinc II ion transmembrane import  positive regulation of protein tyrosine phosphatase activity  
Ontology : EGO-EBInegative regulation of B cell apoptotic process  zinc ion transmembrane transporter activity  integral component of plasma membrane  cellular zinc ion homeostasis  positive regulation of B cell proliferation  positive regulation of B cell receptor signaling pathway  zinc II ion transmembrane import  positive regulation of protein tyrosine phosphatase activity  
NDEx NetworkSLC39A10
Atlas of Cancer Signalling NetworkSLC39A10
Wikipedia pathwaysSLC39A10
Orthology - Evolution
OrthoDB57181
GeneTree (enSembl)ENSG00000196950
Phylogenetic Trees/Animal Genes : TreeFamSLC39A10
HOVERGENQ9ULF5
HOGENOMQ9ULF5
Homologs : HomoloGeneSLC39A10
Homology/Alignments : Family Browser (UCSC)SLC39A10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC39A10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC39A10
dbVarSLC39A10
ClinVarSLC39A10
1000_GenomesSLC39A10 
Exome Variant ServerSLC39A10
ExAC (Exome Aggregation Consortium)SLC39A10 (select the gene name)
Genetic variants : HAPMAP57181
Genomic Variants (DGV)SLC39A10 [DGVbeta]
DECIPHERSLC39A10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC39A10 
Mutations
ICGC Data PortalSLC39A10 
TCGA Data PortalSLC39A10 
Broad Tumor PortalSLC39A10
OASIS PortalSLC39A10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC39A10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC39A10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC39A10
DgiDB (Drug Gene Interaction Database)SLC39A10
DoCM (Curated mutations)SLC39A10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC39A10 (select a term)
intoGenSLC39A10
Cancer3DSLC39A10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608733   
Orphanet
MedgenSLC39A10
Genetic Testing Registry SLC39A10
NextProtQ9ULF5 [Medical]
TSGene57181
GENETestsSLC39A10
Target ValidationSLC39A10
Huge Navigator SLC39A10 [HugePedia]
snp3D : Map Gene to Disease57181
BioCentury BCIQSLC39A10
ClinGenSLC39A10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57181
Chemical/Pharm GKB GenePA134944068
Clinical trialSLC39A10
Miscellaneous
canSAR (ICR)SLC39A10 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC39A10
EVEXSLC39A10
GoPubMedSLC39A10
iHOPSLC39A10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:07:41 CEST 2017

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