Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC39A11 (solute carrier family 39 member 11)

Identity

Alias_namesC17orf26
chromosome 17 open reading frame 26
solute carrier family 39, member 11
Other aliasZIP11
HGNC (Hugo) SLC39A11
LocusID (NCBI) 201266
Atlas_Id 55643
Location 17q24.3  [Link to chromosome band 17q24]
Location_base_pair Starts at 70642085 and ends at 71088853 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
BRD2 (6p21.32) / SLC39A11 (17q24.3)ERBB2 (17q12) / SLC39A11 (17q24.3)MSI2 (17q22) / SLC39A11 (17q24.3)
NFE2L1 (17q21.32) / SLC39A11 (17q24.3)SLC39A11 (17q24.3) / ARAP1 (11q13.4)SLC39A11 (17q24.3) / C17orf80 (17q25.1)
SLC39A11 (17q24.3) / CD69 (12p13.31)SLC39A11 (17q24.3) / PITPNC1 (17q24.2)SLC39A11 (17q24.3) / SDK2 (17q25.1)
SLC39A11 (17q24.3) / WBSCR17 (7q11.22)TMEM154 (4q31.3) / SLC39A11 (17q24.3)USP22 (17p11.2) / SLC39A11 (17q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC39A11   14463
Cards
Entrez_Gene (NCBI)SLC39A11  201266  solute carrier family 39 member 11
AliasesC17orf26; ZIP11
GeneCards (Weizmann)SLC39A11
Ensembl hg19 (Hinxton)ENSG00000133195 [Gene_View]  chr17:70642085-71088853 [Contig_View]  SLC39A11 [Vega]
Ensembl hg38 (Hinxton)ENSG00000133195 [Gene_View]  chr17:70642085-71088853 [Contig_View]  SLC39A11 [Vega]
ICGC DataPortalENSG00000133195
TCGA cBioPortalSLC39A11
AceView (NCBI)SLC39A11
Genatlas (Paris)SLC39A11
WikiGenes201266
SOURCE (Princeton)SLC39A11
Genetics Home Reference (NIH)SLC39A11
Genomic and cartography
GoldenPath hg19 (UCSC)SLC39A11  -     chr17:70642085-71088853 -  17q24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC39A11  -     17q24.3   [Description]    (hg38-Dec_2013)
EnsemblSLC39A11 - 17q24.3 [CytoView hg19]  SLC39A11 - 17q24.3 [CytoView hg38]
Mapping of homologs : NCBISLC39A11 [Mapview hg19]  SLC39A11 [Mapview hg38]
OMIM616508   
Gene and transcription
Genbank (Entrez)AF331643 AK095227 AK313376 BC035631 BU686998
RefSeq transcript (Entrez)NM_001159770 NM_139177
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)SLC39A11
Cluster EST : UnigeneHs.221127 [ NCBI ]
CGAP (NCI)Hs.221127
Alternative Splicing GalleryENSG00000133195
Gene ExpressionSLC39A11 [ NCBI-GEO ]   SLC39A11 [ EBI - ARRAY_EXPRESS ]   SLC39A11 [ SEEK ]   SLC39A11 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC39A11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)201266
GTEX Portal (Tissue expression)SLC39A11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N1S5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N1S5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N1S5
Splice isoforms : SwissVarQ8N1S5
PhosPhoSitePlusQ8N1S5
Domains : Interpro (EBI)ZIP   
Domain families : Pfam (Sanger)Zip (PF02535)   
Domain families : Pfam (NCBI)pfam02535   
Conserved Domain (NCBI)SLC39A11
DMDM Disease mutations201266
Blocks (Seattle)SLC39A11
SuperfamilyQ8N1S5
Human Protein AtlasENSG00000133195
Peptide AtlasQ8N1S5
HPRD15383
IPIIPI00477112   IPI00410249   
Protein Interaction databases
DIP (DOE-UCLA)Q8N1S5
IntAct (EBI)Q8N1S5
FunCoupENSG00000133195
BioGRIDSLC39A11
STRING (EMBL)SLC39A11
ZODIACSLC39A11
Ontologies - Pathways
QuickGOQ8N1S5
Ontology : AmiGOzinc ion transmembrane transporter activity  zinc ion transmembrane transporter activity  nucleus  cytoplasm  Golgi apparatus  plasma membrane  membrane  integral component of membrane  zinc II ion transmembrane transport  
Ontology : EGO-EBIzinc ion transmembrane transporter activity  zinc ion transmembrane transporter activity  nucleus  cytoplasm  Golgi apparatus  plasma membrane  membrane  integral component of membrane  zinc II ion transmembrane transport  
NDEx NetworkSLC39A11
Atlas of Cancer Signalling NetworkSLC39A11
Wikipedia pathwaysSLC39A11
Orthology - Evolution
OrthoDB201266
GeneTree (enSembl)ENSG00000133195
Phylogenetic Trees/Animal Genes : TreeFamSLC39A11
HOVERGENQ8N1S5
HOGENOMQ8N1S5
Homologs : HomoloGeneSLC39A11
Homology/Alignments : Family Browser (UCSC)SLC39A11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC39A11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC39A11
dbVarSLC39A11
ClinVarSLC39A11
1000_GenomesSLC39A11 
Exome Variant ServerSLC39A11
ExAC (Exome Aggregation Consortium)SLC39A11 (select the gene name)
Genetic variants : HAPMAP201266
Genomic Variants (DGV)SLC39A11 [DGVbeta]
DECIPHER (Syndromes)17:70642085-71088853  ENSG00000133195
CONAN: Copy Number AnalysisSLC39A11 
Mutations
ICGC Data PortalSLC39A11 
TCGA Data PortalSLC39A11 
Broad Tumor PortalSLC39A11
OASIS PortalSLC39A11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC39A11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC39A11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC39A11
DgiDB (Drug Gene Interaction Database)SLC39A11
DoCM (Curated mutations)SLC39A11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC39A11 (select a term)
intoGenSLC39A11
Cancer3DSLC39A11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616508   
Orphanet
MedgenSLC39A11
Genetic Testing Registry SLC39A11
NextProtQ8N1S5 [Medical]
TSGene201266
GENETestsSLC39A11
Huge Navigator SLC39A11 [HugePedia]
snp3D : Map Gene to Disease201266
BioCentury BCIQSLC39A11
ClinGenSLC39A11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD201266
Chemical/Pharm GKB GenePA25581
Clinical trialSLC39A11
Miscellaneous
canSAR (ICR)SLC39A11 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC39A11
EVEXSLC39A11
GoPubMedSLC39A11
iHOPSLC39A11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:27:53 CET 2017

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