Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SLC39A12 (solute carrier family 39 member 12)

Identity

Alias_namessolute carrier family 39 (metal ion transporter), member 12
solute carrier family 39 (zinc transporter), member 12
Alias_symbol (synonym)FLJ30499
Other aliasLZT-Hs8
ZIP-12
bA570F3.1
HGNC (Hugo) SLC39A12
LocusID (NCBI) 221074
Atlas_Id 73432
Location 10p12.33  [Link to chromosome band 10p12]
Location_base_pair Starts at 17951839 and ends at 18043292 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SLC39A12   20860
Cards
Entrez_Gene (NCBI)SLC39A12  221074  solute carrier family 39 member 12
AliasesLZT-Hs8; ZIP-12; bA570F3.1
GeneCards (Weizmann)SLC39A12
Ensembl hg19 (Hinxton)ENSG00000148482 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148482 [Gene_View]  chr10:17951839-18043292 [Contig_View]  SLC39A12 [Vega]
ICGC DataPortalENSG00000148482
TCGA cBioPortalSLC39A12
AceView (NCBI)SLC39A12
Genatlas (Paris)SLC39A12
WikiGenes221074
SOURCE (Princeton)SLC39A12
Genetics Home Reference (NIH)SLC39A12
Genomic and cartography
GoldenPath hg38 (UCSC)SLC39A12  -     chr10:17951839-18043292 +  10p12.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC39A12  -     10p12.33   [Description]    (hg19-Feb_2009)
EnsemblSLC39A12 - 10p12.33 [CytoView hg19]  SLC39A12 - 10p12.33 [CytoView hg38]
Mapping of homologs : NCBISLC39A12 [Mapview hg19]  SLC39A12 [Mapview hg38]
OMIM608734   
Gene and transcription
Genbank (Entrez)AK055061 AK295294 AK303735 BC035118 BC047635
RefSeq transcript (Entrez)NM_001145195 NM_001282733 NM_001282734 NM_152725
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC39A12
Cluster EST : UnigeneHs.350895 [ NCBI ]
CGAP (NCI)Hs.350895
Alternative Splicing GalleryENSG00000148482
Gene ExpressionSLC39A12 [ NCBI-GEO ]   SLC39A12 [ EBI - ARRAY_EXPRESS ]   SLC39A12 [ SEEK ]   SLC39A12 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC39A12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221074
GTEX Portal (Tissue expression)SLC39A12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ504Y0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ504Y0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ504Y0
Splice isoforms : SwissVarQ504Y0
PhosPhoSitePlusQ504Y0
Domains : Interpro (EBI)ZIP   
Domain families : Pfam (Sanger)Zip (PF02535)   
Domain families : Pfam (NCBI)pfam02535   
Conserved Domain (NCBI)SLC39A12
DMDM Disease mutations221074
Blocks (Seattle)SLC39A12
SuperfamilyQ504Y0
Human Protein AtlasENSG00000148482
Peptide AtlasQ504Y0
HPRD15384
IPIIPI00791191   IPI00877067   IPI00043756   IPI00937627   IPI01010783   
Protein Interaction databases
DIP (DOE-UCLA)Q504Y0
IntAct (EBI)Q504Y0
FunCoupENSG00000148482
BioGRIDSLC39A12
STRING (EMBL)SLC39A12
ZODIACSLC39A12
Ontologies - Pathways
QuickGOQ504Y0
Ontology : AmiGOzinc ion transmembrane transporter activity  integral component of plasma membrane  cellular zinc ion homeostasis  signal transduction  regulation of neuron projection development  regulation of microtubule polymerization  perinuclear region of cytoplasm  zinc II ion transmembrane import  extracellular vesicle  
Ontology : EGO-EBIzinc ion transmembrane transporter activity  integral component of plasma membrane  cellular zinc ion homeostasis  signal transduction  regulation of neuron projection development  regulation of microtubule polymerization  perinuclear region of cytoplasm  zinc II ion transmembrane import  extracellular vesicle  
NDEx NetworkSLC39A12
Atlas of Cancer Signalling NetworkSLC39A12
Wikipedia pathwaysSLC39A12
Orthology - Evolution
OrthoDB221074
GeneTree (enSembl)ENSG00000148482
Phylogenetic Trees/Animal Genes : TreeFamSLC39A12
HOVERGENQ504Y0
HOGENOMQ504Y0
Homologs : HomoloGeneSLC39A12
Homology/Alignments : Family Browser (UCSC)SLC39A12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC39A12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC39A12
dbVarSLC39A12
ClinVarSLC39A12
1000_GenomesSLC39A12 
Exome Variant ServerSLC39A12
ExAC (Exome Aggregation Consortium)SLC39A12 (select the gene name)
Genetic variants : HAPMAP221074
Genomic Variants (DGV)SLC39A12 [DGVbeta]
DECIPHERSLC39A12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC39A12 
Mutations
ICGC Data PortalSLC39A12 
TCGA Data PortalSLC39A12 
Broad Tumor PortalSLC39A12
OASIS PortalSLC39A12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC39A12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC39A12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC39A12
DgiDB (Drug Gene Interaction Database)SLC39A12
DoCM (Curated mutations)SLC39A12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC39A12 (select a term)
intoGenSLC39A12
Cancer3DSLC39A12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608734   
Orphanet
MedgenSLC39A12
Genetic Testing Registry SLC39A12
NextProtQ504Y0 [Medical]
TSGene221074
GENETestsSLC39A12
Target ValidationSLC39A12
Huge Navigator SLC39A12 [HugePedia]
snp3D : Map Gene to Disease221074
BioCentury BCIQSLC39A12
ClinGenSLC39A12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221074
Chemical/Pharm GKB GenePA134956205
Clinical trialSLC39A12
Miscellaneous
canSAR (ICR)SLC39A12 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC39A12
EVEXSLC39A12
GoPubMedSLC39A12
iHOPSLC39A12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:41:19 CEST 2017
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