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SLC39A14 (solute carrier family 39 member 14)

Identity

Alias_namessolute carrier family 39 (metal ion transporter), member 14
solute carrier family 39 (zinc transporter), member 14
Alias_symbol (synonym)KIAA0062
NET34
ZIP14
Other aliasHMNDYT2
LZT-Hs4
cig19
HGNC (Hugo) SLC39A14
LocusID (NCBI) 23516
Atlas_Id 43062
Location 8p21.3  [Link to chromosome band 8p21]
Location_base_pair Starts at 22367249 and ends at 22422736 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GEMIN7 (19q13.32) / SLC39A14 (8p21.3)SLC39A14 (8p21.3) / PRKDC (8q11.21)SLC39A14 (8p21.3) / TSPAN15 (10q22.1)
ZMYND8 (20q13.12) / SLC39A14 (8p21.3)SLC39A14 8p21.3 / PRKDC 8q11.21

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC39A14   20858
Cards
Entrez_Gene (NCBI)SLC39A14  23516  solute carrier family 39 member 14
AliasesHMNDYT2; LZT-Hs4; NET34; ZIP14; 
cig19
GeneCards (Weizmann)SLC39A14
Ensembl hg19 (Hinxton)ENSG00000104635 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104635 [Gene_View]  chr8:22367249-22422736 [Contig_View]  SLC39A14 [Vega]
ICGC DataPortalENSG00000104635
TCGA cBioPortalSLC39A14
AceView (NCBI)SLC39A14
Genatlas (Paris)SLC39A14
WikiGenes23516
SOURCE (Princeton)SLC39A14
Genetics Home Reference (NIH)SLC39A14
Genomic and cartography
GoldenPath hg38 (UCSC)SLC39A14  -     chr8:22367249-22422736 +  8p21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC39A14  -     8p21.3   [Description]    (hg19-Feb_2009)
EnsemblSLC39A14 - 8p21.3 [CytoView hg19]  SLC39A14 - 8p21.3 [CytoView hg38]
Mapping of homologs : NCBISLC39A14 [Mapview hg19]  SLC39A14 [Mapview hg38]
OMIM608736   617013   
Gene and transcription
Genbank (Entrez)AA181885 AF026940 AK172810 AK295807 BC000068
RefSeq transcript (Entrez)NM_001128431 NM_001135153 NM_001135154 NM_015359
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC39A14
Cluster EST : UnigeneHs.491232 [ NCBI ]
CGAP (NCI)Hs.491232
Alternative Splicing GalleryENSG00000104635
Gene ExpressionSLC39A14 [ NCBI-GEO ]   SLC39A14 [ EBI - ARRAY_EXPRESS ]   SLC39A14 [ SEEK ]   SLC39A14 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC39A14 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23516
GTEX Portal (Tissue expression)SLC39A14
Human Protein AtlasENSG00000104635-SLC39A14 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15043   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15043  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15043
Splice isoforms : SwissVarQ15043
PhosPhoSitePlusQ15043
Domains : Interpro (EBI)ZIP   
Domain families : Pfam (Sanger)Zip (PF02535)   
Domain families : Pfam (NCBI)pfam02535   
Conserved Domain (NCBI)SLC39A14
DMDM Disease mutations23516
Blocks (Seattle)SLC39A14
SuperfamilyQ15043
Human Protein Atlas [tissue]ENSG00000104635-SLC39A14 [tissue]
Peptide AtlasQ15043
HPRD12288
IPIIPI00014236   IPI00303452   IPI00973181   IPI00981297   IPI00975884   IPI00981869   IPI00984803   IPI01013731   IPI00983663   
Protein Interaction databases
DIP (DOE-UCLA)Q15043
IntAct (EBI)Q15043
FunCoupENSG00000104635
BioGRIDSLC39A14
STRING (EMBL)SLC39A14
ZODIACSLC39A14
Ontologies - Pathways
QuickGOQ15043
Ontology : AmiGOzinc ion transmembrane transporter activity  zinc ion transmembrane transporter activity  cytoplasm  plasma membrane  plasma membrane  integral component of plasma membrane  cellular zinc ion homeostasis  ferrous iron transmembrane transporter activity  integral component of membrane  lamellipodium  zinc II ion transmembrane transport  zinc II ion transmembrane transport  zinc II ion transmembrane import  ferrous iron transmembrane transport  
Ontology : EGO-EBIzinc ion transmembrane transporter activity  zinc ion transmembrane transporter activity  cytoplasm  plasma membrane  plasma membrane  integral component of plasma membrane  cellular zinc ion homeostasis  ferrous iron transmembrane transporter activity  integral component of membrane  lamellipodium  zinc II ion transmembrane transport  zinc II ion transmembrane transport  zinc II ion transmembrane import  ferrous iron transmembrane transport  
NDEx NetworkSLC39A14
Atlas of Cancer Signalling NetworkSLC39A14
Wikipedia pathwaysSLC39A14
Orthology - Evolution
OrthoDB23516
GeneTree (enSembl)ENSG00000104635
Phylogenetic Trees/Animal Genes : TreeFamSLC39A14
HOVERGENQ15043
HOGENOMQ15043
Homologs : HomoloGeneSLC39A14
Homology/Alignments : Family Browser (UCSC)SLC39A14
Gene fusions - Rearrangements
Fusion : MitelmanGEMIN7/SLC39A14 [19q13.32/8p21.3]  [t(8;19)(p21;q13)]  
Fusion : MitelmanSLC39A14/PRKDC [8p21.3/8q11.21]  [t(8;8)(p21;q11)]  
Fusion : MitelmanSLC39A14/TSPAN15 [8p21.3/10q22.1]  [t(8;10)(p21;q22)]  
Fusion: TCGA_MDACCSLC39A14 8p21.3 PRKDC 8q11.21 BRCA
Tumor Fusion PortalSLC39A14
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC39A14 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC39A14
dbVarSLC39A14
ClinVarSLC39A14
1000_GenomesSLC39A14 
Exome Variant ServerSLC39A14
ExAC (Exome Aggregation Consortium)ENSG00000104635
GNOMAD BrowserENSG00000104635
Genetic variants : HAPMAP23516
Genomic Variants (DGV)SLC39A14 [DGVbeta]
DECIPHERSLC39A14 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC39A14 
Mutations
ICGC Data PortalSLC39A14 
TCGA Data PortalSLC39A14 
Broad Tumor PortalSLC39A14
OASIS PortalSLC39A14 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC39A14  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC39A14
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC39A14
DgiDB (Drug Gene Interaction Database)SLC39A14
DoCM (Curated mutations)SLC39A14 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC39A14 (select a term)
intoGenSLC39A14
Cancer3DSLC39A14(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608736    617013   
Orphanet
DisGeNETSLC39A14
MedgenSLC39A14
Genetic Testing Registry SLC39A14
NextProtQ15043 [Medical]
TSGene23516
GENETestsSLC39A14
Target ValidationSLC39A14
Huge Navigator SLC39A14 [HugePedia]
snp3D : Map Gene to Disease23516
BioCentury BCIQSLC39A14
ClinGenSLC39A14
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23516
Chemical/Pharm GKB GenePA134863701
Clinical trialSLC39A14
Miscellaneous
canSAR (ICR)SLC39A14 (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC39A14
EVEXSLC39A14
GoPubMedSLC39A14
iHOPSLC39A14
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:35:14 CET 2017

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