Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SLC39A3 (solute carrier family 39 (zinc transporter), member 3)

Identity

Other namesZIP3
HGNC (Hugo) SLC39A3
LocusID (NCBI) 29985
Location 19p13.3
Location_base_pair Starts at 2732523 and ends at 2740074 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)SLC39A3   17128
Entrez_Gene (NCBI)SLC39A3  29985  solute carrier family 39 (zinc transporter), member 3
Cards
GeneCards (Weizmann)SLC39A3
Ensembl (Hinxton)ENSG00000141873 [Gene_View]  chr19:2732523-2740074 [Contig_View]  SLC39A3 [Vega]
AceView (NCBI)SLC39A3
Genatlas (Paris)SLC39A3
SOURCE (Stanford)NM_144564 NM_213568
Genomic and cartography
GoldenPath (UCSC)SLC39A3  -  19p13.3   chr19:2732523-2740074 -  19p13.3   [Description]    (hg19-Feb_2009)
EnsemblSLC39A3 - 19p13.3 [CytoView]
Mapping of homologs : NCBISLC39A3 [Mapview]
OMIM612168   
Gene and transcription
Genbank (Entrez)AF052125 AK002044 AK302600 BC000815 BC005869
RefSeq transcript (SRS)NM_144564 NM_213568
RefSeq transcript (Entrez)NM_144564 NM_213568
RefSeq genomic (SRS)AC_000151 NC_000019 NC_018930 NT_011255 NW_001838476 NW_004078096
RefSeq genomic (Entrez)AC_000151 NC_000019 NC_018930 NT_011255 NW_001838476 NW_004078096
Consensus coding sequences : CCDS (NCBI)SLC39A3
Cluster EST : UnigeneHs.515046 [ SRS ] Hs.515046 [ NCBI ]
CGAP (NCI)Hs.515046
Alternative Splicing : Fast-db (Paris)GSHG0015350
Alternative Splicing GalleryENSG00000141873
Gene ExpressionSLC39A3 [ NCBI-GEO ]   SLC39A3 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BRY0 (SRS) Q9BRY0 (Uniprot)
NextProtQ9BRY0
With graphics : InterProQ9BRY0
Splice isoforms : SwissVarQ9BRY0(Swissvar)
Domains : Interpro (SRS)ZIP   
Domains : Interpro (EBI)ZIP   
Related proteins : CluSTrQ9BRY0
Domain families : Pfam (SRS)Zip (PF02535)   
Domain families : Pfam (Sanger)Zip (PF02535)   
Domain families : Pfam (NCBI)pfam02535   
DMDM29985
Blocks (Seattle)Q9BRY0
Human Protein AtlasENSG00000141873
HPRD15386
IPIIPI00029337   IPI00382918   IPI01012923   
Protein Interaction databases
DIP (DOE-UCLA)Q9BRY0
IntAct (EBI)Q9BRY0
FunCoupENSG00000141873
REACTOMESLC39A3
Protein Interaction Database29985
BioGRIDSLC39A3
InParanoidQ9BRY0
Interologous Interaction database Q9BRY0
IntegromeDBSLC39A3
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SLC39A3
SNP (GeneSNP Utah)SLC39A3
SNP : HGBaseSLC39A3
Genetic variants : HAPMAPSLC39A3
Somatic Mutations in Cancer : COSMICSLC39A3 
CONAN: Copy Number AnalysisSLC39A3 
Mutations and Diseases : HGMDSLC39A3
OMIM612168   
GENETests612168   
Disease Genetic AssociationSLC39A3
Huge Navigator SLC39A3 [HugePedia]  SLC39A3 [HugeCancerGEM]
Genomic VariantsSLC39A3  SLC39A3 [DGVbeta]
snp3D : Map Gene to Disease29985
General knowledge
Homologs : HomoloGeneSLC39A3
Homology/Alignments : Family Browser (UCSC)SLC39A3
Phylogenetic Trees/Animal Genes : TreeFamSLC39A3
Chemical/Protein Interactions : CTD29985
Chemical/Pharm GKB GenePA38203
Clinical trialSLC39A3
Cancer Resource (Charite)ENSG00000141873
Ontology : AmiGOzinc ion transmembrane transporter activity  plasma membrane  integral to membrane  transmembrane transport  
Ontology : EGO-EBIzinc ion transmembrane transporter activity  plasma membrane  integral to membrane  transmembrane transport  
Other databases
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
PubGeneSLC39A3
iHOPSLC39A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:28:36 CEST 2013
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