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SLC39A3 (solute carrier family 39 member 3)

Identity

Alias_namessolute carrier family 39 (zinc transporter)
Alias_symbol (synonym)ZIP3
Other aliasZIP-3
HGNC (Hugo) SLC39A3
LocusID (NCBI) 29985
Atlas_Id 52588
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 2732525 and ends at 2740076 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SLC39A3 (19p13.3) / PLPP2 (19p13.3)SLC39A3 (19p13.3) / SGTA (19p13.3)SLC39A3 (19p13.3) / SLC39A3 (19p13.3)
SLC39A3 19p13.3 / PPAP2C 19p13.3SLC39A3 19p13.3 / SGTA 19p13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC39A3   17128
Cards
Entrez_Gene (NCBI)SLC39A3  29985  solute carrier family 39 member 3
AliasesZIP-3; ZIP3
GeneCards (Weizmann)SLC39A3
Ensembl hg19 (Hinxton)ENSG00000141873 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000141873 [Gene_View]  chr19:2732525-2740076 [Contig_View]  SLC39A3 [Vega]
ICGC DataPortalENSG00000141873
TCGA cBioPortalSLC39A3
AceView (NCBI)SLC39A3
Genatlas (Paris)SLC39A3
WikiGenes29985
SOURCE (Princeton)SLC39A3
Genetics Home Reference (NIH)SLC39A3
Genomic and cartography
GoldenPath hg38 (UCSC)SLC39A3  -     chr19:2732525-2740076 -  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC39A3  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblSLC39A3 - 19p13.3 [CytoView hg19]  SLC39A3 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBISLC39A3 [Mapview hg19]  SLC39A3 [Mapview hg38]
OMIM612168   
Gene and transcription
Genbank (Entrez)AF052125 AK002044 AK302600 BC000815 BC005869
RefSeq transcript (Entrez)NM_144564 NM_213568
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC39A3
Cluster EST : UnigeneHs.515046 [ NCBI ]
CGAP (NCI)Hs.515046
Alternative Splicing GalleryENSG00000141873
Gene ExpressionSLC39A3 [ NCBI-GEO ]   SLC39A3 [ EBI - ARRAY_EXPRESS ]   SLC39A3 [ SEEK ]   SLC39A3 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC39A3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29985
GTEX Portal (Tissue expression)SLC39A3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BRY0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BRY0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BRY0
Splice isoforms : SwissVarQ9BRY0
PhosPhoSitePlusQ9BRY0
Domains : Interpro (EBI)ZIP   
Domain families : Pfam (Sanger)Zip (PF02535)   
Domain families : Pfam (NCBI)pfam02535   
Conserved Domain (NCBI)SLC39A3
DMDM Disease mutations29985
Blocks (Seattle)SLC39A3
SuperfamilyQ9BRY0
Human Protein AtlasENSG00000141873
Peptide AtlasQ9BRY0
HPRD15386
IPIIPI00029337   IPI00382918   IPI01012923   
Protein Interaction databases
DIP (DOE-UCLA)Q9BRY0
IntAct (EBI)Q9BRY0
FunCoupENSG00000141873
BioGRIDSLC39A3
STRING (EMBL)SLC39A3
ZODIACSLC39A3
Ontologies - Pathways
QuickGOQ9BRY0
Ontology : AmiGOzinc ion transmembrane transporter activity  plasma membrane  integral component of membrane  zinc II ion transmembrane transport  
Ontology : EGO-EBIzinc ion transmembrane transporter activity  plasma membrane  integral component of membrane  zinc II ion transmembrane transport  
NDEx NetworkSLC39A3
Atlas of Cancer Signalling NetworkSLC39A3
Wikipedia pathwaysSLC39A3
Orthology - Evolution
OrthoDB29985
GeneTree (enSembl)ENSG00000141873
Phylogenetic Trees/Animal Genes : TreeFamSLC39A3
HOVERGENQ9BRY0
HOGENOMQ9BRY0
Homologs : HomoloGeneSLC39A3
Homology/Alignments : Family Browser (UCSC)SLC39A3
Gene fusions - Rearrangements
Fusion : MitelmanSLC39A3/PPAP2C [19p13.3/19p13.3]  
Fusion : MitelmanSLC39A3/SGTA [19p13.3/19p13.3]  [t(19;19)(p13;p13)]  
Fusion: TCGASLC39A3 19p13.3 PPAP2C 19p13.3 BRCA
Fusion: TCGASLC39A3 19p13.3 SGTA 19p13.3 GBM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC39A3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC39A3
dbVarSLC39A3
ClinVarSLC39A3
1000_GenomesSLC39A3 
Exome Variant ServerSLC39A3
ExAC (Exome Aggregation Consortium)SLC39A3 (select the gene name)
Genetic variants : HAPMAP29985
Genomic Variants (DGV)SLC39A3 [DGVbeta]
DECIPHERSLC39A3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC39A3 
Mutations
ICGC Data PortalSLC39A3 
TCGA Data PortalSLC39A3 
Broad Tumor PortalSLC39A3
OASIS PortalSLC39A3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC39A3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC39A3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC39A3
DgiDB (Drug Gene Interaction Database)SLC39A3
DoCM (Curated mutations)SLC39A3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC39A3 (select a term)
intoGenSLC39A3
Cancer3DSLC39A3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612168   
Orphanet
MedgenSLC39A3
Genetic Testing Registry SLC39A3
NextProtQ9BRY0 [Medical]
TSGene29985
GENETestsSLC39A3
Target ValidationSLC39A3
Huge Navigator SLC39A3 [HugePedia]
snp3D : Map Gene to Disease29985
BioCentury BCIQSLC39A3
ClinGenSLC39A3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29985
Chemical/Pharm GKB GenePA38203
Clinical trialSLC39A3
Miscellaneous
canSAR (ICR)SLC39A3 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC39A3
EVEXSLC39A3
GoPubMedSLC39A3
iHOPSLC39A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:56:09 CEST 2017

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