Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC39A5 (solute carrier family 39 member 5)

Identity

Alias_namessolute carrier family 39 (metal ion transporter), member 5
solute carrier family 39 (zinc transporter), member 5
Other aliasLZT-Hs7
MYP24
ZIP5
HGNC (Hugo) SLC39A5
LocusID (NCBI) 283375
Atlas_Id 55757
Location 12q13.3  [Link to chromosome band 12q13]
Location_base_pair Starts at 56230717 and ends at 56237845 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC39A5   20502
Cards
Entrez_Gene (NCBI)SLC39A5  283375  solute carrier family 39 member 5
AliasesLZT-Hs7; MYP24; ZIP5
GeneCards (Weizmann)SLC39A5
Ensembl hg19 (Hinxton)ENSG00000139540 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139540 [Gene_View]  chr12:56230717-56237845 [Contig_View]  SLC39A5 [Vega]
ICGC DataPortalENSG00000139540
TCGA cBioPortalSLC39A5
AceView (NCBI)SLC39A5
Genatlas (Paris)SLC39A5
WikiGenes283375
SOURCE (Princeton)SLC39A5
Genetics Home Reference (NIH)SLC39A5
Genomic and cartography
GoldenPath hg38 (UCSC)SLC39A5  -     chr12:56230717-56237845 +  12q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC39A5  -     12q13.3   [Description]    (hg19-Feb_2009)
EnsemblSLC39A5 - 12q13.3 [CytoView hg19]  SLC39A5 - 12q13.3 [CytoView hg38]
Mapping of homologs : NCBISLC39A5 [Mapview hg19]  SLC39A5 [Mapview hg38]
OMIM608730   615946   
Gene and transcription
Genbank (Entrez)AK172768 AK298331 AK313188 BC027884 DA640935
RefSeq transcript (Entrez)NM_001135195 NM_173596
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC39A5
Cluster EST : UnigeneHs.591018 [ NCBI ]
CGAP (NCI)Hs.591018
Alternative Splicing GalleryENSG00000139540
Gene ExpressionSLC39A5 [ NCBI-GEO ]   SLC39A5 [ EBI - ARRAY_EXPRESS ]   SLC39A5 [ SEEK ]   SLC39A5 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC39A5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283375
GTEX Portal (Tissue expression)SLC39A5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZMH5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZMH5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZMH5
Splice isoforms : SwissVarQ6ZMH5
PhosPhoSitePlusQ6ZMH5
Domains : Interpro (EBI)ZIP   
Domain families : Pfam (Sanger)Zip (PF02535)   
Domain families : Pfam (NCBI)pfam02535   
Conserved Domain (NCBI)SLC39A5
DMDM Disease mutations283375
Blocks (Seattle)SLC39A5
SuperfamilyQ6ZMH5
Human Protein AtlasENSG00000139540
Peptide AtlasQ6ZMH5
IPIIPI00927805   IPI00924871   IPI00924693   IPI00924463   IPI01014106   IPI00927542   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZMH5
IntAct (EBI)Q6ZMH5
FunCoupENSG00000139540
BioGRIDSLC39A5
STRING (EMBL)SLC39A5
ZODIACSLC39A5
Ontologies - Pathways
QuickGOQ6ZMH5
Ontology : AmiGOeye development  molecular_function  zinc ion transmembrane transporter activity  integral component of plasma membrane  cellular zinc ion homeostasis  basolateral plasma membrane  BMP signaling pathway  cellular response to zinc ion starvation  positive regulation of mRNA splicing, via spliceosome  neural precursor cell proliferation  extracellular exosome  G1 to G0 transition involved in cell differentiation  zinc II ion transmembrane import  
Ontology : EGO-EBIeye development  molecular_function  zinc ion transmembrane transporter activity  integral component of plasma membrane  cellular zinc ion homeostasis  basolateral plasma membrane  BMP signaling pathway  cellular response to zinc ion starvation  positive regulation of mRNA splicing, via spliceosome  neural precursor cell proliferation  extracellular exosome  G1 to G0 transition involved in cell differentiation  zinc II ion transmembrane import  
NDEx NetworkSLC39A5
Atlas of Cancer Signalling NetworkSLC39A5
Wikipedia pathwaysSLC39A5
Orthology - Evolution
OrthoDB283375
GeneTree (enSembl)ENSG00000139540
Phylogenetic Trees/Animal Genes : TreeFamSLC39A5
HOVERGENQ6ZMH5
HOGENOMQ6ZMH5
Homologs : HomoloGeneSLC39A5
Homology/Alignments : Family Browser (UCSC)SLC39A5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC39A5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC39A5
dbVarSLC39A5
ClinVarSLC39A5
1000_GenomesSLC39A5 
Exome Variant ServerSLC39A5
ExAC (Exome Aggregation Consortium)SLC39A5 (select the gene name)
Genetic variants : HAPMAP283375
Genomic Variants (DGV)SLC39A5 [DGVbeta]
DECIPHERSLC39A5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC39A5 
Mutations
ICGC Data PortalSLC39A5 
TCGA Data PortalSLC39A5 
Broad Tumor PortalSLC39A5
OASIS PortalSLC39A5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC39A5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC39A5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC39A5
DgiDB (Drug Gene Interaction Database)SLC39A5
DoCM (Curated mutations)SLC39A5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC39A5 (select a term)
intoGenSLC39A5
Cancer3DSLC39A5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608730    615946   
Orphanet
MedgenSLC39A5
Genetic Testing Registry SLC39A5
NextProtQ6ZMH5 [Medical]
TSGene283375
GENETestsSLC39A5
Target ValidationSLC39A5
Huge Navigator SLC39A5 [HugePedia]
snp3D : Map Gene to Disease283375
BioCentury BCIQSLC39A5
ClinGenSLC39A5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283375
Chemical/Pharm GKB GenePA134872687
Clinical trialSLC39A5
Miscellaneous
canSAR (ICR)SLC39A5 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC39A5
EVEXSLC39A5
GoPubMedSLC39A5
iHOPSLC39A5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:56:09 CEST 2017

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