Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC39A7 (solute carrier family 39 member 7)

Identity

Alias_namesHKE4
HLA class II region expressed gene KE4
solute carrier family 39 (zinc transporter), member 7
Alias_symbol (synonym)H2-KE4
D6S2244E
KE4
RING5
ZIP7
Other aliasD6S115E
HGNC (Hugo) SLC39A7
LocusID (NCBI) 7922
Atlas_Id 56175
Location 6p21.32  [Link to chromosome band 6p21]
Location_base_pair Starts at 33200826 and ends at 33204437 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
COL1A1 (17q21.33) / SLC39A7 (6p21.32)SLC39A7 (6p21.32) / IER3 (6p21.33)SLC39A7 (6p21.32) / SLC39A7 (6p21.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC39A7   4927
Cards
Entrez_Gene (NCBI)SLC39A7  7922  solute carrier family 39 member 7
AliasesD6S115E; D6S2244E; H2-KE4; HKE4; 
KE4; RING5; ZIP7
GeneCards (Weizmann)SLC39A7
Ensembl hg19 (Hinxton)ENSG00000112473 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000112473 [Gene_View]  ENSG00000112473 [Sequence]  chr6:33200826-33204437 [Contig_View]  SLC39A7 [Vega]
ICGC DataPortalENSG00000112473
TCGA cBioPortalSLC39A7
AceView (NCBI)SLC39A7
Genatlas (Paris)SLC39A7
WikiGenes7922
SOURCE (Princeton)SLC39A7
Genetics Home Reference (NIH)SLC39A7
Genomic and cartography
GoldenPath hg38 (UCSC)SLC39A7  -     chr6:33200826-33204437 +  6p21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC39A7  -     6p21.32   [Description]    (hg19-Feb_2009)
EnsemblSLC39A7 - 6p21.32 [CytoView hg19]  SLC39A7 - 6p21.32 [CytoView hg38]
Mapping of homologs : NCBISLC39A7 [Mapview hg19]  SLC39A7 [Mapview hg38]
OMIM601416   
Gene and transcription
Genbank (Entrez)AK225282 AK225682 AK301126 AK303158 BC000645
RefSeq transcript (Entrez)NM_001077516 NM_001288777 NM_006979
RefSeq genomic (Entrez)NC_000006 NG_023374 NT_113891 NT_167245 NT_167246 NT_167247 NT_167248
Consensus coding sequences : CCDS (NCBI)SLC39A7
Cluster EST : UnigeneHs.631995 [ NCBI ]
CGAP (NCI)Hs.631995
Alternative Splicing GalleryENSG00000112473
Gene ExpressionSLC39A7 [ NCBI-GEO ]   SLC39A7 [ EBI - ARRAY_EXPRESS ]   SLC39A7 [ SEEK ]   SLC39A7 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC39A7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7922
GTEX Portal (Tissue expression)SLC39A7
Human Protein AtlasENSG00000112473-SLC39A7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92504   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92504  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92504
Splice isoforms : SwissVarQ92504
PhosPhoSitePlusQ92504
Domains : Interpro (EBI)ZIP   
Domain families : Pfam (Sanger)Zip (PF02535)   
Domain families : Pfam (NCBI)pfam02535   
Conserved Domain (NCBI)SLC39A7
DMDM Disease mutations7922
Blocks (Seattle)SLC39A7
SuperfamilyQ92504
Human Protein Atlas [tissue]ENSG00000112473-SLC39A7 [tissue]
Peptide AtlasQ92504
HPRD09028
IPIIPI00021888   IPI01008853   IPI01014684   
Protein Interaction databases
DIP (DOE-UCLA)Q92504
IntAct (EBI)Q92504
FunCoupENSG00000112473
BioGRIDSLC39A7
STRING (EMBL)SLC39A7
ZODIACSLC39A7
Ontologies - Pathways
QuickGOQ92504
Ontology : AmiGOzinc ion transmembrane transporter activity  zinc ion transmembrane transporter activity  protein binding  nucleoplasm  endoplasmic reticulum  endoplasmic reticulum membrane  Golgi apparatus  cellular zinc ion homeostasis  membrane  integral component of membrane  zinc ion transmembrane transport  
Ontology : EGO-EBIzinc ion transmembrane transporter activity  zinc ion transmembrane transporter activity  protein binding  nucleoplasm  endoplasmic reticulum  endoplasmic reticulum membrane  Golgi apparatus  cellular zinc ion homeostasis  membrane  integral component of membrane  zinc ion transmembrane transport  
NDEx NetworkSLC39A7
Atlas of Cancer Signalling NetworkSLC39A7
Wikipedia pathwaysSLC39A7
Orthology - Evolution
OrthoDB7922
GeneTree (enSembl)ENSG00000112473
Phylogenetic Trees/Animal Genes : TreeFamSLC39A7
HOVERGENQ92504
HOGENOMQ92504
Homologs : HomoloGeneSLC39A7
Homology/Alignments : Family Browser (UCSC)SLC39A7
Gene fusions - Rearrangements
Fusion : QuiverSLC39A7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC39A7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC39A7
dbVarSLC39A7
ClinVarSLC39A7
1000_GenomesSLC39A7 
Exome Variant ServerSLC39A7
ExAC (Exome Aggregation Consortium)ENSG00000112473
GNOMAD BrowserENSG00000112473
Varsome BrowserSLC39A7
Genetic variants : HAPMAP7922
Genomic Variants (DGV)SLC39A7 [DGVbeta]
DECIPHERSLC39A7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC39A7 
Mutations
ICGC Data PortalSLC39A7 
TCGA Data PortalSLC39A7 
Broad Tumor PortalSLC39A7
OASIS PortalSLC39A7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC39A7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC39A7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC39A7
DgiDB (Drug Gene Interaction Database)SLC39A7
DoCM (Curated mutations)SLC39A7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC39A7 (select a term)
intoGenSLC39A7
Cancer3DSLC39A7(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601416   
Orphanet
DisGeNETSLC39A7
MedgenSLC39A7
Genetic Testing Registry SLC39A7
NextProtQ92504 [Medical]
TSGene7922
GENETestsSLC39A7
Target ValidationSLC39A7
Huge Navigator SLC39A7 [HugePedia]
snp3D : Map Gene to Disease7922
BioCentury BCIQSLC39A7
ClinGenSLC39A7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7922
Chemical/Pharm GKB GenePA29305
Clinical trialSLC39A7
Miscellaneous
canSAR (ICR)SLC39A7 (select the gene name)
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC39A7
EVEXSLC39A7
GoPubMedSLC39A7
iHOPSLC39A7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:40:01 CET 2018

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