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SLC39A8 (solute carrier family 39 member 8)

Identity

Alias_namessolute carrier family 39 (metal ion transporter), member 8
solute carrier family 39 (zinc transporter), member 8
Alias_symbol (synonym)BIGM103
Other aliasCDG2N
LZT-Hs6
PP3105
ZIP8
HGNC (Hugo) SLC39A8
LocusID (NCBI) 64116
Atlas_Id 73437
Location 4q24  [Link to chromosome band 4q24]
Location_base_pair Starts at 102261664 and ends at 102345498 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HAUS6 (9p22.1) / SLC39A8 (4q24)SLC39A8 (4q24) / GLS (2q32.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC39A8   20862
Cards
Entrez_Gene (NCBI)SLC39A8  64116  solute carrier family 39 member 8
AliasesBIGM103; CDG2N; LZT-Hs6; PP3105; 
ZIP8
GeneCards (Weizmann)SLC39A8
Ensembl hg19 (Hinxton)ENSG00000138821 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000138821 [Gene_View]  chr4:102261664-102345498 [Contig_View]  SLC39A8 [Vega]
ICGC DataPortalENSG00000138821
TCGA cBioPortalSLC39A8
AceView (NCBI)SLC39A8
Genatlas (Paris)SLC39A8
WikiGenes64116
SOURCE (Princeton)SLC39A8
Genetics Home Reference (NIH)SLC39A8
Genomic and cartography
GoldenPath hg38 (UCSC)SLC39A8  -     chr4:102261664-102345498 -  4q24   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC39A8  -     4q24   [Description]    (hg19-Feb_2009)
EnsemblSLC39A8 - 4q24 [CytoView hg19]  SLC39A8 - 4q24 [CytoView hg38]
Mapping of homologs : NCBISLC39A8 [Mapview hg19]  SLC39A8 [Mapview hg38]
OMIM608732   616721   
Gene and transcription
Genbank (Entrez)AB020969 AB020970 AB040120 AF193052 AK027652
RefSeq transcript (Entrez)NM_001135146 NM_001135147 NM_001135148 NM_022154
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC39A8
Cluster EST : UnigeneHs.288034 [ NCBI ]
CGAP (NCI)Hs.288034
Alternative Splicing GalleryENSG00000138821
Gene ExpressionSLC39A8 [ NCBI-GEO ]   SLC39A8 [ EBI - ARRAY_EXPRESS ]   SLC39A8 [ SEEK ]   SLC39A8 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC39A8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64116
GTEX Portal (Tissue expression)SLC39A8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9C0K1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9C0K1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9C0K1
Splice isoforms : SwissVarQ9C0K1
PhosPhoSitePlusQ9C0K1
Domains : Interpro (EBI)ZIP   
Domain families : Pfam (Sanger)Zip (PF02535)   
Domain families : Pfam (NCBI)pfam02535   
Conserved Domain (NCBI)SLC39A8
DMDM Disease mutations64116
Blocks (Seattle)SLC39A8
SuperfamilyQ9C0K1
Human Protein AtlasENSG00000138821
Peptide AtlasQ9C0K1
HPRD12286
IPIIPI00034208   IPI00877008   IPI00913905   
Protein Interaction databases
DIP (DOE-UCLA)Q9C0K1
IntAct (EBI)Q9C0K1
FunCoupENSG00000138821
BioGRIDSLC39A8
STRING (EMBL)SLC39A8
ZODIACSLC39A8
Ontologies - Pathways
QuickGOQ9C0K1
Ontology : AmiGOzinc ion transmembrane transporter activity  zinc ion transmembrane transporter activity  plasma membrane  integral component of plasma membrane  zinc II ion transport  cellular zinc ion homeostasis  organelle membrane  cadmium ion transmembrane transport  zinc II ion transmembrane import  
Ontology : EGO-EBIzinc ion transmembrane transporter activity  zinc ion transmembrane transporter activity  plasma membrane  integral component of plasma membrane  zinc II ion transport  cellular zinc ion homeostasis  organelle membrane  cadmium ion transmembrane transport  zinc II ion transmembrane import  
NDEx NetworkSLC39A8
Atlas of Cancer Signalling NetworkSLC39A8
Wikipedia pathwaysSLC39A8
Orthology - Evolution
OrthoDB64116
GeneTree (enSembl)ENSG00000138821
Phylogenetic Trees/Animal Genes : TreeFamSLC39A8
HOVERGENQ9C0K1
HOGENOMQ9C0K1
Homologs : HomoloGeneSLC39A8
Homology/Alignments : Family Browser (UCSC)SLC39A8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC39A8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC39A8
dbVarSLC39A8
ClinVarSLC39A8
1000_GenomesSLC39A8 
Exome Variant ServerSLC39A8
ExAC (Exome Aggregation Consortium)SLC39A8 (select the gene name)
Genetic variants : HAPMAP64116
Genomic Variants (DGV)SLC39A8 [DGVbeta]
DECIPHERSLC39A8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC39A8 
Mutations
ICGC Data PortalSLC39A8 
TCGA Data PortalSLC39A8 
Broad Tumor PortalSLC39A8
OASIS PortalSLC39A8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC39A8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC39A8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC39A8
DgiDB (Drug Gene Interaction Database)SLC39A8
DoCM (Curated mutations)SLC39A8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC39A8 (select a term)
intoGenSLC39A8
Cancer3DSLC39A8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608732    616721   
Orphanet
MedgenSLC39A8
Genetic Testing Registry SLC39A8
NextProtQ9C0K1 [Medical]
TSGene64116
GENETestsSLC39A8
Target ValidationSLC39A8
Huge Navigator SLC39A8 [HugePedia]
snp3D : Map Gene to Disease64116
BioCentury BCIQSLC39A8
ClinGenSLC39A8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64116
Chemical/Pharm GKB GenePA134931507
Clinical trialSLC39A8
Miscellaneous
canSAR (ICR)SLC39A8 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC39A8
EVEXSLC39A8
GoPubMedSLC39A8
iHOPSLC39A8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:41:20 CEST 2017

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