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SLC39A9 (solute carrier family 39 member 9)

Identity

Alias_namessolute carrier family 39
Alias_symbol (synonym)FLJ11274
Other aliasZIP-9
ZIP9
HGNC (Hugo) SLC39A9
LocusID (NCBI) 55334
Atlas_Id 54987
Location 14q24.1  [Link to chromosome band 14q24]
Location_base_pair Starts at 69865385 and ends at 69929107 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PLEKHD1 (14q24.1) / SLC39A9 (14q24.1)SLC39A9 (14q24.1) / BCL2L13 (22q11.21)SLC39A9 (14q24.1) / MAP3K9 (14q24.2)
SLC39A9 (14q24.1) / MFF (2q36.3)SLC39A9 (14q24.1) / RAD51B (14q24.1)SLC39A9 (14q24.1) / SEC23IP (10q26.11)
SLC39A9 (14q24.1) / USP15 (12q14.1)ZNF322 (6p22.2) / SLC39A9 (14q24.1)SLC39A9 14q24.1 / BCL2L13 22q11.21
SLC39A9 14q24.1 / RAD51B 14q24.1SLC39A9 14q24.1 / SEC23IP 10q26.11SLC39A9 14q24.1 / USP15 12q14.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC39A9   20182
Cards
Entrez_Gene (NCBI)SLC39A9  55334  solute carrier family 39 member 9
AliasesZIP-9; ZIP9
GeneCards (Weizmann)SLC39A9
Ensembl hg19 (Hinxton)ENSG00000029364 [Gene_View]  chr14:69865385-69929107 [Contig_View]  SLC39A9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000029364 [Gene_View]  chr14:69865385-69929107 [Contig_View]  SLC39A9 [Vega]
ICGC DataPortalENSG00000029364
TCGA cBioPortalSLC39A9
AceView (NCBI)SLC39A9
Genatlas (Paris)SLC39A9
WikiGenes55334
SOURCE (Princeton)SLC39A9
Genetics Home Reference (NIH)SLC39A9
Genomic and cartography
GoldenPath hg19 (UCSC)SLC39A9  -     chr14:69865385-69929107 +  14q24.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC39A9  -     14q24.1   [Description]    (hg38-Dec_2013)
EnsemblSLC39A9 - 14q24.1 [CytoView hg19]  SLC39A9 - 14q24.1 [CytoView hg38]
Mapping of homologs : NCBISLC39A9 [Mapview hg19]  SLC39A9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA884056 AK002136 AK025831 AK222547 AK293222
RefSeq transcript (Entrez)NM_001252148 NM_001252150 NM_001252151 NM_001252152 NM_018375
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)SLC39A9
Cluster EST : UnigeneHs.432690 [ NCBI ]
CGAP (NCI)Hs.432690
Alternative Splicing GalleryENSG00000029364
Gene ExpressionSLC39A9 [ NCBI-GEO ]   SLC39A9 [ EBI - ARRAY_EXPRESS ]   SLC39A9 [ SEEK ]   SLC39A9 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC39A9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55334
GTEX Portal (Tissue expression)SLC39A9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NUM3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NUM3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NUM3
Splice isoforms : SwissVarQ9NUM3
PhosPhoSitePlusQ9NUM3
Domains : Interpro (EBI)ZIP   
Domain families : Pfam (Sanger)Zip (PF02535)   
Domain families : Pfam (NCBI)pfam02535   
Conserved Domain (NCBI)SLC39A9
DMDM Disease mutations55334
Blocks (Seattle)SLC39A9
SuperfamilyQ9NUM3
Human Protein AtlasENSG00000029364
Peptide AtlasQ9NUM3
HPRD15387
IPIIPI00020030   IPI00549442   IPI01025927   
Protein Interaction databases
DIP (DOE-UCLA)Q9NUM3
IntAct (EBI)Q9NUM3
FunCoupENSG00000029364
BioGRIDSLC39A9
STRING (EMBL)SLC39A9
ZODIACSLC39A9
Ontologies - Pathways
QuickGOQ9NUM3
Ontology : AmiGOzinc II ion transport  integral component of membrane  metal ion transmembrane transporter activity  transmembrane transport  
Ontology : EGO-EBIzinc II ion transport  integral component of membrane  metal ion transmembrane transporter activity  transmembrane transport  
NDEx NetworkSLC39A9
Atlas of Cancer Signalling NetworkSLC39A9
Wikipedia pathwaysSLC39A9
Orthology - Evolution
OrthoDB55334
GeneTree (enSembl)ENSG00000029364
Phylogenetic Trees/Animal Genes : TreeFamSLC39A9
HOVERGENQ9NUM3
HOGENOMQ9NUM3
Homologs : HomoloGeneSLC39A9
Homology/Alignments : Family Browser (UCSC)SLC39A9
Gene fusions - Rearrangements
Fusion : MitelmanSLC39A9/BCL2L13 [14q24.1/22q11.21]  
Fusion : MitelmanSLC39A9/RAD51B [14q24.1/14q24.1]  [t(14;14)(q24;q24)]  
Fusion : MitelmanSLC39A9/SEC23IP [14q24.1/10q26.11]  [t(10;14)(q26;q24)]  
Fusion : MitelmanSLC39A9/USP15 [14q24.1/12q14.1]  [t(12;14)(q14;q24)]  
Fusion: TCGASLC39A9 14q24.1 BCL2L13 22q11.21 GBM
Fusion: TCGASLC39A9 14q24.1 RAD51B 14q24.1 BRCA
Fusion: TCGASLC39A9 14q24.1 SEC23IP 10q26.11 OV
Fusion: TCGASLC39A9 14q24.1 USP15 12q14.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC39A9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC39A9
dbVarSLC39A9
ClinVarSLC39A9
1000_GenomesSLC39A9 
Exome Variant ServerSLC39A9
ExAC (Exome Aggregation Consortium)SLC39A9 (select the gene name)
Genetic variants : HAPMAP55334
Genomic Variants (DGV)SLC39A9 [DGVbeta]
DECIPHER (Syndromes)14:69865385-69929107  ENSG00000029364
CONAN: Copy Number AnalysisSLC39A9 
Mutations
ICGC Data PortalSLC39A9 
TCGA Data PortalSLC39A9 
Broad Tumor PortalSLC39A9
OASIS PortalSLC39A9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC39A9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC39A9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC39A9
DgiDB (Drug Gene Interaction Database)SLC39A9
DoCM (Curated mutations)SLC39A9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC39A9 (select a term)
intoGenSLC39A9
Cancer3DSLC39A9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSLC39A9
Genetic Testing Registry SLC39A9
NextProtQ9NUM3 [Medical]
TSGene55334
GENETestsSLC39A9
Huge Navigator SLC39A9 [HugePedia]
snp3D : Map Gene to Disease55334
BioCentury BCIQSLC39A9
ClinGenSLC39A9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55334
Chemical/Pharm GKB GenePA134889179
Clinical trialSLC39A9
Miscellaneous
canSAR (ICR)SLC39A9 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC39A9
EVEXSLC39A9
GoPubMedSLC39A9
iHOPSLC39A9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:19:49 CEST 2017

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