Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC41A1 (solute carrier family 41 (magnesium transporter), member 1)

Identity

Alias_namessolute carrier family 41 (magnesium transporter), member 1
Alias_symbol (synonym)MgtE
Other alias
HGNC (Hugo) SLC41A1
LocusID (NCBI) 254428
Atlas_Id 73440
Location 1q32.1  [Link to chromosome band 1q32]
Location_base_pair Starts at 205758221 and ends at 205782324 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SLC41A1 (1q32.1) / SLC41A1 (1q32.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC41A1   19429
Cards
Entrez_Gene (NCBI)SLC41A1  254428  solute carrier family 41 (magnesium transporter), member 1
AliasesMgtE
GeneCards (Weizmann)SLC41A1
Ensembl hg19 (Hinxton)ENSG00000133065 [Gene_View]  chr1:205758221-205782324 [Contig_View]  SLC41A1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000133065 [Gene_View]  chr1:205758221-205782324 [Contig_View]  SLC41A1 [Vega]
ICGC DataPortalENSG00000133065
TCGA cBioPortalSLC41A1
AceView (NCBI)SLC41A1
Genatlas (Paris)SLC41A1
WikiGenes254428
SOURCE (Princeton)SLC41A1
Genetics Home Reference (NIH)SLC41A1
Genomic and cartography
GoldenPath hg19 (UCSC)SLC41A1  -     chr1:205758221-205782324 -  1q32.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC41A1  -     1q32.1   [Description]    (hg38-Dec_2013)
EnsemblSLC41A1 - 1q32.1 [CytoView hg19]  SLC41A1 - 1q32.1 [CytoView hg38]
Mapping of homologs : NCBISLC41A1 [Mapview hg19]  SLC41A1 [Mapview hg38]
OMIM610801   
Gene and transcription
Genbank (Entrez)AJ514402 AK092123 AK093254 AK125075 AK128069
RefSeq transcript (Entrez)NM_173854
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)SLC41A1
Cluster EST : UnigeneHs.20274 [ NCBI ]
CGAP (NCI)Hs.20274
Alternative Splicing GalleryENSG00000133065
Gene ExpressionSLC41A1 [ NCBI-GEO ]   SLC41A1 [ EBI - ARRAY_EXPRESS ]   SLC41A1 [ SEEK ]   SLC41A1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC41A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)254428
GTEX Portal (Tissue expression)SLC41A1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IVJ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IVJ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IVJ1
Splice isoforms : SwissVarQ8IVJ1
PhosPhoSitePlusQ8IVJ1
Domains : Interpro (EBI)SLC41_membr_dom   
Domain families : Pfam (Sanger)MgtE (PF01769)   
Domain families : Pfam (NCBI)pfam01769   
Conserved Domain (NCBI)SLC41A1
DMDM Disease mutations254428
Blocks (Seattle)SLC41A1
SuperfamilyQ8IVJ1
Human Protein AtlasENSG00000133065
Peptide AtlasQ8IVJ1
HPRD15388
IPIIPI00550598   
Protein Interaction databases
DIP (DOE-UCLA)Q8IVJ1
IntAct (EBI)Q8IVJ1
FunCoupENSG00000133065
BioGRIDSLC41A1
STRING (EMBL)SLC41A1
ZODIACSLC41A1
Ontologies - Pathways
QuickGOQ8IVJ1
Ontology : AmiGOplasma membrane  cation transmembrane transporter activity  integral component of membrane  transmembrane transport  cation transmembrane transport  
Ontology : EGO-EBIplasma membrane  cation transmembrane transporter activity  integral component of membrane  transmembrane transport  cation transmembrane transport  
NDEx NetworkSLC41A1
Atlas of Cancer Signalling NetworkSLC41A1
Wikipedia pathwaysSLC41A1
Orthology - Evolution
OrthoDB254428
GeneTree (enSembl)ENSG00000133065
Phylogenetic Trees/Animal Genes : TreeFamSLC41A1
HOVERGENQ8IVJ1
HOGENOMQ8IVJ1
Homologs : HomoloGeneSLC41A1
Homology/Alignments : Family Browser (UCSC)SLC41A1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC41A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC41A1
dbVarSLC41A1
ClinVarSLC41A1
1000_GenomesSLC41A1 
Exome Variant ServerSLC41A1
ExAC (Exome Aggregation Consortium)SLC41A1 (select the gene name)
Genetic variants : HAPMAP254428
Genomic Variants (DGV)SLC41A1 [DGVbeta]
DECIPHER (Syndromes)1:205758221-205782324  ENSG00000133065
CONAN: Copy Number AnalysisSLC41A1 
Mutations
ICGC Data PortalSLC41A1 
TCGA Data PortalSLC41A1 
Broad Tumor PortalSLC41A1
OASIS PortalSLC41A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC41A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC41A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC41A1
DgiDB (Drug Gene Interaction Database)SLC41A1
DoCM (Curated mutations)SLC41A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC41A1 (select a term)
intoGenSLC41A1
Cancer3DSLC41A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610801   
Orphanet
MedgenSLC41A1
Genetic Testing Registry SLC41A1
NextProtQ8IVJ1 [Medical]
TSGene254428
GENETestsSLC41A1
Huge Navigator SLC41A1 [HugePedia]
snp3D : Map Gene to Disease254428
BioCentury BCIQSLC41A1
ClinGenSLC41A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD254428
Chemical/Pharm GKB GenePA134889327
Clinical trialSLC41A1
Miscellaneous
canSAR (ICR)SLC41A1 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC41A1
EVEXSLC41A1
GoPubMedSLC41A1
iHOPSLC41A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:43:47 CET 2017

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