Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC41A2 (solute carrier family 41 (magnesium transporter), member 2)

Identity

Alias_namessolute carrier family 41, member 2
solute carrier family 41 (magnesium transporter), member 2
Alias_symbol (synonym)DKFZP434K0427
Other aliasSLC41A1-L1
HGNC (Hugo) SLC41A2
LocusID (NCBI) 84102
Atlas_Id 73441
Location 12q23.3  [Link to chromosome band 12q23]
Location_base_pair Starts at 105197275 and ends at 105322472 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CHST11 (12q23.3) / SLC41A2 (12q23.3)SLC41A2 (12q23.3) / ANAPC7 (12q24.11)SLC41A2 (12q23.3) / GGA1 (22q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC41A2   31045
Cards
Entrez_Gene (NCBI)SLC41A2  84102  solute carrier family 41 (magnesium transporter), member 2
AliasesSLC41A1-L1
GeneCards (Weizmann)SLC41A2
Ensembl hg19 (Hinxton)ENSG00000136052 [Gene_View]  chr12:105197275-105322472 [Contig_View]  SLC41A2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000136052 [Gene_View]  chr12:105197275-105322472 [Contig_View]  SLC41A2 [Vega]
ICGC DataPortalENSG00000136052
TCGA cBioPortalSLC41A2
AceView (NCBI)SLC41A2
Genatlas (Paris)SLC41A2
WikiGenes84102
SOURCE (Princeton)SLC41A2
Genetics Home Reference (NIH)SLC41A2
Genomic and cartography
GoldenPath hg19 (UCSC)SLC41A2  -     chr12:105197275-105322472 -  12q23.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC41A2  -     12q23.3   [Description]    (hg38-Dec_2013)
EnsemblSLC41A2 - 12q23.3 [CytoView hg19]  SLC41A2 - 12q23.3 [CytoView hg38]
Mapping of homologs : NCBISLC41A2 [Mapview hg19]  SLC41A2 [Mapview hg38]
OMIM610802   
Gene and transcription
Genbank (Entrez)AK027838 AL136828 AW016390 BC036734 BC106871
RefSeq transcript (Entrez)NM_032148
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)SLC41A2
Cluster EST : UnigeneHs.577463 [ NCBI ]
CGAP (NCI)Hs.577463
Alternative Splicing GalleryENSG00000136052
Gene ExpressionSLC41A2 [ NCBI-GEO ]   SLC41A2 [ EBI - ARRAY_EXPRESS ]   SLC41A2 [ SEEK ]   SLC41A2 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC41A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84102
GTEX Portal (Tissue expression)SLC41A2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96JW4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96JW4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96JW4
Splice isoforms : SwissVarQ96JW4
PhosPhoSitePlusQ96JW4
Domains : Interpro (EBI)SLC41_membr_dom   
Domain families : Pfam (Sanger)MgtE (PF01769)   
Domain families : Pfam (NCBI)pfam01769   
Conserved Domain (NCBI)SLC41A2
DMDM Disease mutations84102
Blocks (Seattle)SLC41A2
SuperfamilyQ96JW4
Human Protein AtlasENSG00000136052
Peptide AtlasQ96JW4
HPRD15389
IPIIPI00030307   IPI00925698   IPI00925481   IPI00925273   IPI00925090   IPI00924445   IPI00927739   IPI00927522   IPI00927310   
Protein Interaction databases
DIP (DOE-UCLA)Q96JW4
IntAct (EBI)Q96JW4
FunCoupENSG00000136052
BioGRIDSLC41A2
STRING (EMBL)SLC41A2
ZODIACSLC41A2
Ontologies - Pathways
QuickGOQ96JW4
Ontology : AmiGOprotein binding  plasma membrane  cation transmembrane transporter activity  integral component of membrane  transmembrane transport  cation transmembrane transport  
Ontology : EGO-EBIprotein binding  plasma membrane  cation transmembrane transporter activity  integral component of membrane  transmembrane transport  cation transmembrane transport  
NDEx NetworkSLC41A2
Atlas of Cancer Signalling NetworkSLC41A2
Wikipedia pathwaysSLC41A2
Orthology - Evolution
OrthoDB84102
GeneTree (enSembl)ENSG00000136052
Phylogenetic Trees/Animal Genes : TreeFamSLC41A2
HOVERGENQ96JW4
HOGENOMQ96JW4
Homologs : HomoloGeneSLC41A2
Homology/Alignments : Family Browser (UCSC)SLC41A2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC41A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC41A2
dbVarSLC41A2
ClinVarSLC41A2
1000_GenomesSLC41A2 
Exome Variant ServerSLC41A2
ExAC (Exome Aggregation Consortium)SLC41A2 (select the gene name)
Genetic variants : HAPMAP84102
Genomic Variants (DGV)SLC41A2 [DGVbeta]
DECIPHER (Syndromes)12:105197275-105322472  ENSG00000136052
CONAN: Copy Number AnalysisSLC41A2 
Mutations
ICGC Data PortalSLC41A2 
TCGA Data PortalSLC41A2 
Broad Tumor PortalSLC41A2
OASIS PortalSLC41A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC41A2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC41A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC41A2
DgiDB (Drug Gene Interaction Database)SLC41A2
DoCM (Curated mutations)SLC41A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC41A2 (select a term)
intoGenSLC41A2
Cancer3DSLC41A2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610802   
Orphanet
MedgenSLC41A2
Genetic Testing Registry SLC41A2
NextProtQ96JW4 [Medical]
TSGene84102
GENETestsSLC41A2
Huge Navigator SLC41A2 [HugePedia]
snp3D : Map Gene to Disease84102
BioCentury BCIQSLC41A2
ClinGenSLC41A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84102
Chemical/Pharm GKB GenePA134931432
Clinical trialSLC41A2
Miscellaneous
canSAR (ICR)SLC41A2 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC41A2
EVEXSLC41A2
GoPubMedSLC41A2
iHOPSLC41A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:43:47 CET 2017

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