Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SLC41A3 (solute carrier family 41, member 3)

Identity

Alias_namessolute carrier family 41, member 3
Alias_symbol (synonym)FLJ20473
Other aliasSLC41A1-L2
HGNC (Hugo) SLC41A3
LocusID (NCBI) 54946
Atlas_Id 73442
Location 3q21.2  [Link to chromosome band 3q21]
Location_base_pair Starts at 125725200 and ends at 125803134 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RNF19A (8q22.2) / SLC41A3 (3q21.2)SLC41A3 (3q21.2) / RECQL5 (17q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC41A3   31046
Cards
Entrez_Gene (NCBI)SLC41A3  54946  solute carrier family 41, member 3
AliasesSLC41A1-L2
GeneCards (Weizmann)SLC41A3
Ensembl hg19 (Hinxton)ENSG00000114544 [Gene_View]  chr3:125725200-125803134 [Contig_View]  SLC41A3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000114544 [Gene_View]  chr3:125725200-125803134 [Contig_View]  SLC41A3 [Vega]
ICGC DataPortalENSG00000114544
TCGA cBioPortalSLC41A3
AceView (NCBI)SLC41A3
Genatlas (Paris)SLC41A3
WikiGenes54946
SOURCE (Princeton)SLC41A3
Genetics Home Reference (NIH)SLC41A3
Genomic and cartography
GoldenPath hg19 (UCSC)SLC41A3  -     chr3:125725200-125803134 -  3q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC41A3  -     3q21.2   [Description]    (hg38-Dec_2013)
EnsemblSLC41A3 - 3q21.2 [CytoView hg19]  SLC41A3 - 3q21.2 [CytoView hg38]
Mapping of homologs : NCBISLC41A3 [Mapview hg19]  SLC41A3 [Mapview hg38]
OMIM610803   
Gene and transcription
Genbank (Entrez)AI814125 AK000480 AK021925 AK022780 AK091671
RefSeq transcript (Entrez)NM_001008485 NM_001008486 NM_001008487 NM_001164475 NM_017836
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)SLC41A3
Cluster EST : UnigeneHs.573007 [ NCBI ]
CGAP (NCI)Hs.573007
Alternative Splicing GalleryENSG00000114544
Gene ExpressionSLC41A3 [ NCBI-GEO ]   SLC41A3 [ EBI - ARRAY_EXPRESS ]   SLC41A3 [ SEEK ]   SLC41A3 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC41A3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54946
GTEX Portal (Tissue expression)SLC41A3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96GZ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96GZ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96GZ6
Splice isoforms : SwissVarQ96GZ6
PhosPhoSitePlusQ96GZ6
Domains : Interpro (EBI)SLC41_membr_dom   
Domain families : Pfam (Sanger)MgtE (PF01769)   
Domain families : Pfam (NCBI)pfam01769   
Conserved Domain (NCBI)SLC41A3
DMDM Disease mutations54946
Blocks (Seattle)SLC41A3
SuperfamilyQ96GZ6
Human Protein AtlasENSG00000114544
Peptide AtlasQ96GZ6
HPRD11580
IPIIPI00305733   IPI00854829   IPI00333095   IPI00854593   IPI00872905   IPI00640697   IPI00514919   IPI00216826   IPI00984091   IPI00964972   IPI00798066   IPI00966016   IPI00965715   IPI00964316   IPI00964003   IPI00965304   IPI00966687   IPI00965747   IPI00966214   IPI00967029   
Protein Interaction databases
DIP (DOE-UCLA)Q96GZ6
IntAct (EBI)Q96GZ6
FunCoupENSG00000114544
BioGRIDSLC41A3
STRING (EMBL)SLC41A3
ZODIACSLC41A3
Ontologies - Pathways
QuickGOQ96GZ6
Ontology : AmiGOprotein binding  plasma membrane  cation transmembrane transporter activity  integral component of membrane  cation transmembrane transport  
Ontology : EGO-EBIprotein binding  plasma membrane  cation transmembrane transporter activity  integral component of membrane  cation transmembrane transport  
NDEx NetworkSLC41A3
Atlas of Cancer Signalling NetworkSLC41A3
Wikipedia pathwaysSLC41A3
Orthology - Evolution
OrthoDB54946
GeneTree (enSembl)ENSG00000114544
Phylogenetic Trees/Animal Genes : TreeFamSLC41A3
HOVERGENQ96GZ6
HOGENOMQ96GZ6
Homologs : HomoloGeneSLC41A3
Homology/Alignments : Family Browser (UCSC)SLC41A3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC41A3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC41A3
dbVarSLC41A3
ClinVarSLC41A3
1000_GenomesSLC41A3 
Exome Variant ServerSLC41A3
ExAC (Exome Aggregation Consortium)SLC41A3 (select the gene name)
Genetic variants : HAPMAP54946
Genomic Variants (DGV)SLC41A3 [DGVbeta]
DECIPHER (Syndromes)3:125725200-125803134  ENSG00000114544
CONAN: Copy Number AnalysisSLC41A3 
Mutations
ICGC Data PortalSLC41A3 
TCGA Data PortalSLC41A3 
Broad Tumor PortalSLC41A3
OASIS PortalSLC41A3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC41A3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC41A3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC41A3
DgiDB (Drug Gene Interaction Database)SLC41A3
DoCM (Curated mutations)SLC41A3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC41A3 (select a term)
intoGenSLC41A3
Cancer3DSLC41A3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610803   
Orphanet
MedgenSLC41A3
Genetic Testing Registry SLC41A3
NextProtQ96GZ6 [Medical]
TSGene54946
GENETestsSLC41A3
Huge Navigator SLC41A3 [HugePedia]
snp3D : Map Gene to Disease54946
BioCentury BCIQSLC41A3
ClinGenSLC41A3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54946
Chemical/Pharm GKB GenePA134878151
Clinical trialSLC41A3
Miscellaneous
canSAR (ICR)SLC41A3 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC41A3
EVEXSLC41A3
GoPubMedSLC41A3
iHOPSLC41A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:43:47 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.