Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC43A1 (solute carrier family 43 member 1)

Identity

Alias_namesPOV1
prostate cancer overexpressed gene 1
solute carrier family 43 (amino acid system L transporter), member 1
Alias_symbol (synonym)R00504
PB39
Other aliasLAT3
HGNC (Hugo) SLC43A1
LocusID (NCBI) 8501
Atlas_Id 42324
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 57484531 and ends at 57514885 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LCP1 (13q14.13) / SLC43A1 (11q12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC43A1   9225
Cards
Entrez_Gene (NCBI)SLC43A1  8501  solute carrier family 43 member 1
AliasesLAT3; PB39; POV1; R00504
GeneCards (Weizmann)SLC43A1
Ensembl hg19 (Hinxton)ENSG00000149150 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149150 [Gene_View]  chr11:57484531-57514885 [Contig_View]  SLC43A1 [Vega]
ICGC DataPortalENSG00000149150
TCGA cBioPortalSLC43A1
AceView (NCBI)SLC43A1
Genatlas (Paris)SLC43A1
WikiGenes8501
SOURCE (Princeton)SLC43A1
Genetics Home Reference (NIH)SLC43A1
Genomic and cartography
GoldenPath hg38 (UCSC)SLC43A1  -     chr11:57484531-57514885 -  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC43A1  -     11q12.1   [Description]    (hg19-Feb_2009)
EnsemblSLC43A1 - 11q12.1 [CytoView hg19]  SLC43A1 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBISLC43A1 [Mapview hg19]  SLC43A1 [Mapview hg38]
OMIM603733   
Gene and transcription
Genbank (Entrez)AA040589 AB103033 AF045584 AK027732 BC001639
RefSeq transcript (Entrez)NM_001198810 NM_003627
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC43A1
Cluster EST : UnigeneHs.735724 [ NCBI ]
CGAP (NCI)Hs.735724
Alternative Splicing GalleryENSG00000149150
Gene ExpressionSLC43A1 [ NCBI-GEO ]   SLC43A1 [ EBI - ARRAY_EXPRESS ]   SLC43A1 [ SEEK ]   SLC43A1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC43A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8501
GTEX Portal (Tissue expression)SLC43A1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75387   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75387  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75387
Splice isoforms : SwissVarO75387
PhosPhoSitePlusO75387
Domains : Interpro (EBI)MFS    MFS_dom   
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
Conserved Domain (NCBI)SLC43A1
DMDM Disease mutations8501
Blocks (Seattle)SLC43A1
SuperfamilyO75387
Human Protein AtlasENSG00000149150
Peptide AtlasO75387
HPRD07227
IPIIPI00021075   IPI00479732   IPI00983372   IPI00975679   IPI00975735   IPI00977712   IPI00977102   IPI00979342   
Protein Interaction databases
DIP (DOE-UCLA)O75387
IntAct (EBI)O75387
FunCoupENSG00000149150
BioGRIDSLC43A1
STRING (EMBL)SLC43A1
ZODIACSLC43A1
Ontologies - Pathways
QuickGOO75387
Ontology : AmiGOplasma membrane  integral component of plasma membrane  amino acid transport  amino acid transmembrane transporter activity  neutral amino acid transmembrane transporter activity  L-amino acid transmembrane transporter activity  neutral amino acid transport  L-alpha-amino acid transmembrane transport  
Ontology : EGO-EBIplasma membrane  integral component of plasma membrane  amino acid transport  amino acid transmembrane transporter activity  neutral amino acid transmembrane transporter activity  L-amino acid transmembrane transporter activity  neutral amino acid transport  L-alpha-amino acid transmembrane transport  
NDEx NetworkSLC43A1
Atlas of Cancer Signalling NetworkSLC43A1
Wikipedia pathwaysSLC43A1
Orthology - Evolution
OrthoDB8501
GeneTree (enSembl)ENSG00000149150
Phylogenetic Trees/Animal Genes : TreeFamSLC43A1
HOVERGENO75387
HOGENOMO75387
Homologs : HomoloGeneSLC43A1
Homology/Alignments : Family Browser (UCSC)SLC43A1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC43A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC43A1
dbVarSLC43A1
ClinVarSLC43A1
1000_GenomesSLC43A1 
Exome Variant ServerSLC43A1
ExAC (Exome Aggregation Consortium)SLC43A1 (select the gene name)
Genetic variants : HAPMAP8501
Genomic Variants (DGV)SLC43A1 [DGVbeta]
DECIPHERSLC43A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC43A1 
Mutations
ICGC Data PortalSLC43A1 
TCGA Data PortalSLC43A1 
Broad Tumor PortalSLC43A1
OASIS PortalSLC43A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC43A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC43A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC43A1
DgiDB (Drug Gene Interaction Database)SLC43A1
DoCM (Curated mutations)SLC43A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC43A1 (select a term)
intoGenSLC43A1
Cancer3DSLC43A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603733   
Orphanet
MedgenSLC43A1
Genetic Testing Registry SLC43A1
NextProtO75387 [Medical]
TSGene8501
GENETestsSLC43A1
Target ValidationSLC43A1
Huge Navigator SLC43A1 [HugePedia]
snp3D : Map Gene to Disease8501
BioCentury BCIQSLC43A1
ClinGenSLC43A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8501
Chemical/Pharm GKB GenePA33549
Clinical trialSLC43A1
Miscellaneous
canSAR (ICR)SLC43A1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC43A1
EVEXSLC43A1
GoPubMedSLC43A1
iHOPSLC43A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:07:42 CEST 2017

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