Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SLC43A2 (solute carrier family 43 member 2)

Identity

Alias_namessolute carrier family 43 (amino acid system L transporter), member 2
Alias_symbol (synonym)MGC34680
Other aliasLAT4
HGNC (Hugo) SLC43A2
LocusID (NCBI) 124935
Atlas_Id 73443
Location 17p13.3  [Link to chromosome band 17p13]
Location_base_pair Starts at 1569254 and ends at 1628375 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EPAS1 (2p21) / SLC43A2 (17p13.3)KDELR1 (19q13.33) / SLC43A2 (17p13.3)MYO1C (17p13.3) / SLC43A2 (17p13.3)
PITPNA (17p13.3) / SLC43A2 (17p13.3)RELL1 (4p14) / SLC43A2 (17p13.3)SLC43A2 (17p13.3) / SCARF1 (17p13.3)
SLC43A2 (17p13.3) / SLC43A2 (17p13.3)SLC43A2 (17p13.3) / SMG6 (17p13.3)TMEM11 (17p11.2) / SLC43A2 (17p13.3)
YWHAE (17p13.3) / SLC43A2 (17p13.3)SLC43A2 SMG6SLC43A2 SCARF1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC43A2   23087
Cards
Entrez_Gene (NCBI)SLC43A2  124935  solute carrier family 43 member 2
AliasesLAT4
GeneCards (Weizmann)SLC43A2
Ensembl hg19 (Hinxton)ENSG00000167703 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167703 [Gene_View]  chr17:1569254-1628375 [Contig_View]  SLC43A2 [Vega]
ICGC DataPortalENSG00000167703
TCGA cBioPortalSLC43A2
AceView (NCBI)SLC43A2
Genatlas (Paris)SLC43A2
WikiGenes124935
SOURCE (Princeton)SLC43A2
Genetics Home Reference (NIH)SLC43A2
Genomic and cartography
GoldenPath hg38 (UCSC)SLC43A2  -     chr17:1569254-1628375 -  17p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC43A2  -     17p13.3   [Description]    (hg19-Feb_2009)
EnsemblSLC43A2 - 17p13.3 [CytoView hg19]  SLC43A2 - 17p13.3 [CytoView hg38]
Mapping of homologs : NCBISLC43A2 [Mapview hg19]  SLC43A2 [Mapview hg38]
OMIM610791   
Gene and transcription
Genbank (Entrez)AB120364 AF289592 AK056769 AK074428 AK075068
RefSeq transcript (Entrez)NM_001284498 NM_001284499 NM_001321364 NM_001321365 NM_152346
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_187611
Consensus coding sequences : CCDS (NCBI)SLC43A2
Cluster EST : UnigeneHs.732271 [ NCBI ]
CGAP (NCI)Hs.732271
Alternative Splicing GalleryENSG00000167703
Gene ExpressionSLC43A2 [ NCBI-GEO ]   SLC43A2 [ EBI - ARRAY_EXPRESS ]   SLC43A2 [ SEEK ]   SLC43A2 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC43A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)124935
GTEX Portal (Tissue expression)SLC43A2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N370   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N370  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N370
Splice isoforms : SwissVarQ8N370
PhosPhoSitePlusQ8N370
Domains : Interpro (EBI)LAT4    MFS    MFS_dom   
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
Conserved Domain (NCBI)SLC43A2
DMDM Disease mutations124935
Blocks (Seattle)SLC43A2
SuperfamilyQ8N370
Human Protein AtlasENSG00000167703
Peptide AtlasQ8N370
HPRD15390
IPIIPI00171004   IPI00868886   IPI00743343   IPI00942184   IPI00745737   
Protein Interaction databases
DIP (DOE-UCLA)Q8N370
IntAct (EBI)Q8N370
FunCoupENSG00000167703
BioGRIDSLC43A2
STRING (EMBL)SLC43A2
ZODIACSLC43A2
Ontologies - Pathways
QuickGOQ8N370
Ontology : AmiGOplasma membrane  integral component of plasma membrane  amino acid transport  amino acid transmembrane transporter activity  neutral amino acid transmembrane transporter activity  L-amino acid transmembrane transporter activity  neutral amino acid transport  L-alpha-amino acid transmembrane transport  
Ontology : EGO-EBIplasma membrane  integral component of plasma membrane  amino acid transport  amino acid transmembrane transporter activity  neutral amino acid transmembrane transporter activity  L-amino acid transmembrane transporter activity  neutral amino acid transport  L-alpha-amino acid transmembrane transport  
NDEx NetworkSLC43A2
Atlas of Cancer Signalling NetworkSLC43A2
Wikipedia pathwaysSLC43A2
Orthology - Evolution
OrthoDB124935
GeneTree (enSembl)ENSG00000167703
Phylogenetic Trees/Animal Genes : TreeFamSLC43A2
HOVERGENQ8N370
HOGENOMQ8N370
Homologs : HomoloGeneSLC43A2
Homology/Alignments : Family Browser (UCSC)SLC43A2
Gene fusions - Rearrangements
Fusion: TCGASLC43A2 SMG6
Fusion: TCGASLC43A2 SCARF1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC43A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC43A2
dbVarSLC43A2
ClinVarSLC43A2
1000_GenomesSLC43A2 
Exome Variant ServerSLC43A2
ExAC (Exome Aggregation Consortium)SLC43A2 (select the gene name)
Genetic variants : HAPMAP124935
Genomic Variants (DGV)SLC43A2 [DGVbeta]
DECIPHERSLC43A2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC43A2 
Mutations
ICGC Data PortalSLC43A2 
TCGA Data PortalSLC43A2 
Broad Tumor PortalSLC43A2
OASIS PortalSLC43A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC43A2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC43A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC43A2
DgiDB (Drug Gene Interaction Database)SLC43A2
DoCM (Curated mutations)SLC43A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC43A2 (select a term)
intoGenSLC43A2
Cancer3DSLC43A2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610791   
Orphanet
MedgenSLC43A2
Genetic Testing Registry SLC43A2
NextProtQ8N370 [Medical]
TSGene124935
GENETestsSLC43A2
Target ValidationSLC43A2
Huge Navigator SLC43A2 [HugePedia]
snp3D : Map Gene to Disease124935
BioCentury BCIQSLC43A2
ClinGenSLC43A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD124935
Chemical/Pharm GKB GenePA134940765
Clinical trialSLC43A2
Miscellaneous
canSAR (ICR)SLC43A2 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC43A2
EVEXSLC43A2
GoPubMedSLC43A2
iHOPSLC43A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:41:21 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.