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SLC43A3 (solute carrier family 43 member 3)

Identity

Alias_namessolute carrier family 43
Alias_symbol (synonym)SEEEG-1
Eeg1
DKFZp762A227
FOAP-13
PRO1659
Other aliasEEG1
HGNC (Hugo) SLC43A3
LocusID (NCBI) 29015
Atlas_Id 55654
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 57406954 and ends at 57427148 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SLC43A3 (11q12.1) / FAM127A (Xq26.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC43A3   17466
Cards
Entrez_Gene (NCBI)SLC43A3  29015  solute carrier family 43 member 3
AliasesEEG1; FOAP-13; PRO1659; SEEEG-1
GeneCards (Weizmann)SLC43A3
Ensembl hg19 (Hinxton)ENSG00000134802 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134802 [Gene_View]  chr11:57406954-57427148 [Contig_View]  SLC43A3 [Vega]
ICGC DataPortalENSG00000134802
TCGA cBioPortalSLC43A3
AceView (NCBI)SLC43A3
Genatlas (Paris)SLC43A3
WikiGenes29015
SOURCE (Princeton)SLC43A3
Genetics Home Reference (NIH)SLC43A3
Genomic and cartography
GoldenPath hg38 (UCSC)SLC43A3  -     chr11:57406954-57427148 -  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC43A3  -     11q12.1   [Description]    (hg19-Feb_2009)
EnsemblSLC43A3 - 11q12.1 [CytoView hg19]  SLC43A3 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBISLC43A3 [Mapview hg19]  SLC43A3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB028927 AF118070 AK075552 AK290391 AK298028
RefSeq transcript (Entrez)NM_001278201 NM_001278206 NM_014096 NM_017611 NM_199329
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC43A3
Cluster EST : UnigeneHs.99962 [ NCBI ]
CGAP (NCI)Hs.99962
Alternative Splicing GalleryENSG00000134802
Gene ExpressionSLC43A3 [ NCBI-GEO ]   SLC43A3 [ EBI - ARRAY_EXPRESS ]   SLC43A3 [ SEEK ]   SLC43A3 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC43A3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29015
GTEX Portal (Tissue expression)SLC43A3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NBI5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NBI5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NBI5
Splice isoforms : SwissVarQ8NBI5
PhosPhoSitePlusQ8NBI5
Domains : Interpro (EBI)MFS    MFS_dom    SLC43A3   
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
Conserved Domain (NCBI)SLC43A3
DMDM Disease mutations29015
Blocks (Seattle)SLC43A3
SuperfamilyQ8NBI5
Human Protein AtlasENSG00000134802
Peptide AtlasQ8NBI5
HPRD15391
IPIIPI00942265   IPI00910800   IPI00384056   IPI00301100   IPI00978999   IPI00979535   IPI01017957   IPI00976822   IPI01021426   IPI00982193   IPI00984825   IPI00981685   IPI01019042   IPI00976628   IPI00985475   IPI00977791   IPI00984110   IPI00975944   IPI00982839   
Protein Interaction databases
DIP (DOE-UCLA)Q8NBI5
IntAct (EBI)Q8NBI5
FunCoupENSG00000134802
BioGRIDSLC43A3
STRING (EMBL)SLC43A3
ZODIACSLC43A3
Ontologies - Pathways
QuickGOQ8NBI5
Ontology : AmiGOmolecular_function  cellular_component  biological_process  integral component of membrane  transmembrane transport  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  integral component of membrane  transmembrane transport  
NDEx NetworkSLC43A3
Atlas of Cancer Signalling NetworkSLC43A3
Wikipedia pathwaysSLC43A3
Orthology - Evolution
OrthoDB29015
GeneTree (enSembl)ENSG00000134802
Phylogenetic Trees/Animal Genes : TreeFamSLC43A3
HOVERGENQ8NBI5
HOGENOMQ8NBI5
Homologs : HomoloGeneSLC43A3
Homology/Alignments : Family Browser (UCSC)SLC43A3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC43A3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC43A3
dbVarSLC43A3
ClinVarSLC43A3
1000_GenomesSLC43A3 
Exome Variant ServerSLC43A3
ExAC (Exome Aggregation Consortium)SLC43A3 (select the gene name)
Genetic variants : HAPMAP29015
Genomic Variants (DGV)SLC43A3 [DGVbeta]
DECIPHERSLC43A3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC43A3 
Mutations
ICGC Data PortalSLC43A3 
TCGA Data PortalSLC43A3 
Broad Tumor PortalSLC43A3
OASIS PortalSLC43A3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC43A3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC43A3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC43A3
DgiDB (Drug Gene Interaction Database)SLC43A3
DoCM (Curated mutations)SLC43A3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC43A3 (select a term)
intoGenSLC43A3
Cancer3DSLC43A3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSLC43A3
Genetic Testing Registry SLC43A3
NextProtQ8NBI5 [Medical]
TSGene29015
GENETestsSLC43A3
Target ValidationSLC43A3
Huge Navigator SLC43A3 [HugePedia]
snp3D : Map Gene to Disease29015
BioCentury BCIQSLC43A3
ClinGenSLC43A3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29015
Chemical/Pharm GKB GenePA134924689
Clinical trialSLC43A3
Miscellaneous
canSAR (ICR)SLC43A3 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC43A3
EVEXSLC43A3
GoPubMedSLC43A3
iHOPSLC43A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:14:53 CEST 2017

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