Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC44A1 (solute carrier family 44 member 1)

Identity

Alias_namesCDW92
CDW92 antigen
solute carrier family 44 (choline transporter), member 1
Alias_symbol (synonym)CDw92
CTL1
CHTL1
CD92
Other alias
HGNC (Hugo) SLC44A1
LocusID (NCBI) 23446
Atlas_Id 51167
Location 9q31.1  [Link to chromosome band 9q31]
Location_base_pair Starts at 105244613 and ends at 105397347 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NOTCH2 (1p12) / SLC44A1 (9q31.1)SLC44A1 (9q31.1) / KDM2A (11q13.2)SLC44A1 (9q31.1) / PRKCA (17q24.2)
SLC44A1 (9q31.1) / SLC44A1 (9q31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC44A1   18798
Cards
Entrez_Gene (NCBI)SLC44A1  23446  solute carrier family 44 member 1
AliasesCD92; CDW92; CHTL1; CTL1
GeneCards (Weizmann)SLC44A1
Ensembl hg19 (Hinxton)ENSG00000070214 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000070214 [Gene_View]  chr9:105244613-105397347 [Contig_View]  SLC44A1 [Vega]
ICGC DataPortalENSG00000070214
TCGA cBioPortalSLC44A1
AceView (NCBI)SLC44A1
Genatlas (Paris)SLC44A1
WikiGenes23446
SOURCE (Princeton)SLC44A1
Genetics Home Reference (NIH)SLC44A1
Genomic and cartography
GoldenPath hg38 (UCSC)SLC44A1  -     chr9:105244613-105397347 +  9q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC44A1  -     9q31.1   [Description]    (hg19-Feb_2009)
EnsemblSLC44A1 - 9q31.1 [CytoView hg19]  SLC44A1 - 9q31.1 [CytoView hg38]
Mapping of homologs : NCBISLC44A1 [Mapview hg19]  SLC44A1 [Mapview hg38]
OMIM606105   
Gene and transcription
Genbank (Entrez)AJ272365 AJ420812 AK000109 AK022549 AK124926
RefSeq transcript (Entrez)NM_001286730 NM_001330731 NM_022109 NM_080546
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC44A1
Cluster EST : UnigeneHs.573495 [ NCBI ]
CGAP (NCI)Hs.573495
Alternative Splicing GalleryENSG00000070214
Gene ExpressionSLC44A1 [ NCBI-GEO ]   SLC44A1 [ EBI - ARRAY_EXPRESS ]   SLC44A1 [ SEEK ]   SLC44A1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC44A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23446
GTEX Portal (Tissue expression)SLC44A1
Human Protein AtlasENSG00000070214-SLC44A1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WWI5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WWI5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WWI5
Splice isoforms : SwissVarQ8WWI5
PhosPhoSitePlusQ8WWI5
Domains : Interpro (EBI)Choline_transptr-like   
Domain families : Pfam (Sanger)Choline_transpo (PF04515)   
Domain families : Pfam (NCBI)pfam04515   
Conserved Domain (NCBI)SLC44A1
DMDM Disease mutations23446
Blocks (Seattle)SLC44A1
SuperfamilyQ8WWI5
Human Protein Atlas [tissue]ENSG00000070214-SLC44A1 [tissue]
Peptide AtlasQ8WWI5
HPRD16197
IPIIPI00221393   IPI00005068   IPI00642657   
Protein Interaction databases
DIP (DOE-UCLA)Q8WWI5
IntAct (EBI)Q8WWI5
FunCoupENSG00000070214
BioGRIDSLC44A1
STRING (EMBL)SLC44A1
ZODIACSLC44A1
Ontologies - Pathways
QuickGOQ8WWI5
Ontology : AmiGOnucleoplasm  mitochondrion  mitochondrial outer membrane  plasma membrane  phosphatidylcholine biosynthetic process  choline transmembrane transporter activity  choline transport  membrane  integral component of membrane  choline catabolic process  transmembrane transport  extracellular exosome  
Ontology : EGO-EBInucleoplasm  mitochondrion  mitochondrial outer membrane  plasma membrane  phosphatidylcholine biosynthetic process  choline transmembrane transporter activity  choline transport  membrane  integral component of membrane  choline catabolic process  transmembrane transport  extracellular exosome  
NDEx NetworkSLC44A1
Atlas of Cancer Signalling NetworkSLC44A1
Wikipedia pathwaysSLC44A1
Orthology - Evolution
OrthoDB23446
GeneTree (enSembl)ENSG00000070214
Phylogenetic Trees/Animal Genes : TreeFamSLC44A1
HOVERGENQ8WWI5
HOGENOMQ8WWI5
Homologs : HomoloGeneSLC44A1
Homology/Alignments : Family Browser (UCSC)SLC44A1
Gene fusions - Rearrangements
Fusion : MitelmanSLC44A1/PRKCA [9q31.1/17q24.2]  
Tumor Fusion PortalSLC44A1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC44A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC44A1
dbVarSLC44A1
ClinVarSLC44A1
1000_GenomesSLC44A1 
Exome Variant ServerSLC44A1
ExAC (Exome Aggregation Consortium)ENSG00000070214
GNOMAD BrowserENSG00000070214
Genetic variants : HAPMAP23446
Genomic Variants (DGV)SLC44A1 [DGVbeta]
DECIPHERSLC44A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC44A1 
Mutations
ICGC Data PortalSLC44A1 
TCGA Data PortalSLC44A1 
Broad Tumor PortalSLC44A1
OASIS PortalSLC44A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC44A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC44A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC44A1
DgiDB (Drug Gene Interaction Database)SLC44A1
DoCM (Curated mutations)SLC44A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC44A1 (select a term)
intoGenSLC44A1
Cancer3DSLC44A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606105   
Orphanet
DisGeNETSLC44A1
MedgenSLC44A1
Genetic Testing Registry SLC44A1
NextProtQ8WWI5 [Medical]
TSGene23446
GENETestsSLC44A1
Target ValidationSLC44A1
Huge Navigator SLC44A1 [HugePedia]
snp3D : Map Gene to Disease23446
BioCentury BCIQSLC44A1
ClinGenSLC44A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23446
Chemical/Pharm GKB GenePA134958011
Clinical trialSLC44A1
Miscellaneous
canSAR (ICR)SLC44A1 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC44A1
EVEXSLC44A1
GoPubMedSLC44A1
iHOPSLC44A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:35:16 CET 2017

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