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SLC44A3-AS1 (SLC44A3 antisense RNA 1)

Identity

Alias_namesLINC01057
long intergenic non-protein coding RNA 1057
Other aliasXLOC_000303
HGNC (Hugo) SLC44A3-AS1
LocusID (NCBI) 101928079
Atlas_Id 79756
Location 1p21.3  [Link to chromosome band 1p21]
Location_base_pair Starts at 94657533 and ends at 94820281 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC44A3-AS1   49057
Cards
Entrez_Gene (NCBI)SLC44A3-AS1  101928079  SLC44A3 antisense RNA 1
AliasesLINC01057; XLOC_000303
GeneCards (Weizmann)SLC44A3-AS1
Ensembl hg19 (Hinxton)ENSG00000224081 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000224081 [Gene_View]  chr1:94657533-94820281 [Contig_View]  SLC44A3-AS1 [Vega]
ICGC DataPortalENSG00000224081
TCGA cBioPortalSLC44A3-AS1
AceView (NCBI)SLC44A3-AS1
Genatlas (Paris)SLC44A3-AS1
WikiGenes101928079
SOURCE (Princeton)SLC44A3-AS1
Genetics Home Reference (NIH)SLC44A3-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)SLC44A3-AS1  -     chr1:94657533-94820281 -  1p21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC44A3-AS1  -     1p21.3   [Description]    (hg19-Feb_2009)
EnsemblSLC44A3-AS1 - 1p21.3 [CytoView hg19]  SLC44A3-AS1 - 1p21.3 [CytoView hg38]
Mapping of homologs : NCBISLC44A3-AS1 [Mapview hg19]  SLC44A3-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC030750
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC44A3-AS1
Cluster EST : UnigeneHs.596857 [ NCBI ]
CGAP (NCI)Hs.596857
Alternative Splicing GalleryENSG00000224081
Gene ExpressionSLC44A3-AS1 [ NCBI-GEO ]   SLC44A3-AS1 [ EBI - ARRAY_EXPRESS ]   SLC44A3-AS1 [ SEEK ]   SLC44A3-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC44A3-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101928079
GTEX Portal (Tissue expression)SLC44A3-AS1
Human Protein AtlasENSG00000224081-SLC44A3-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SLC44A3-AS1
DMDM Disease mutations101928079
Blocks (Seattle)SLC44A3-AS1
Human Protein Atlas [tissue]ENSG00000224081-SLC44A3-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000224081
BioGRIDSLC44A3-AS1
STRING (EMBL)SLC44A3-AS1
ZODIACSLC44A3-AS1
Ontologies - Pathways
Huge Navigator SLC44A3-AS1 [HugePedia]
snp3D : Map Gene to Disease101928079
BioCentury BCIQSLC44A3-AS1
ClinGenSLC44A3-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101928079
Clinical trialSLC44A3-AS1
Miscellaneous
canSAR (ICR)SLC44A3-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC44A3-AS1
EVEXSLC44A3-AS1
GoPubMedSLC44A3-AS1
iHOPSLC44A3-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:02:57 CET 2017

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