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SLC44A3 (solute carrier family 44 member 3)

Identity

Alias_namessolute carrier family, member 3
solute carrier family 44, member 3
Alias_symbol (synonym)MGC45474
CTL3
Other alias
HGNC (Hugo) SLC44A3
LocusID (NCBI) 126969
Atlas_Id 53768
Location 1p21.3  [Link to chromosome band 1p21]
Location_base_pair Starts at 94820342 and ends at 94895247 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
IFI44L (1p31.1) / SLC44A3 (1p21.3)SH3KBP1 (Xp22.12) / SLC44A3 (1p21.3)SLC44A3 (1p21.3) / ABCD3 (1p21.3)
IFI44L 1p31.1 / SLC44A3 1p21.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC44A3   28689
Cards
Entrez_Gene (NCBI)SLC44A3  126969  solute carrier family 44 member 3
AliasesCTL3
GeneCards (Weizmann)SLC44A3
Ensembl hg19 (Hinxton)ENSG00000143036 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143036 [Gene_View]  chr1:94820342-94895247 [Contig_View]  SLC44A3 [Vega]
ICGC DataPortalENSG00000143036
TCGA cBioPortalSLC44A3
AceView (NCBI)SLC44A3
Genatlas (Paris)SLC44A3
WikiGenes126969
SOURCE (Princeton)SLC44A3
Genetics Home Reference (NIH)SLC44A3
Genomic and cartography
GoldenPath hg38 (UCSC)SLC44A3  -     chr1:94820342-94895247 +  1p21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC44A3  -     1p21.3   [Description]    (hg19-Feb_2009)
EnsemblSLC44A3 - 1p21.3 [CytoView hg19]  SLC44A3 - 1p21.3 [CytoView hg38]
Mapping of homologs : NCBISLC44A3 [Mapview hg19]  SLC44A3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK300193 AK301288 AK302381 AK303906 AK313574
RefSeq transcript (Entrez)NM_001114106 NM_001258340 NM_001258341 NM_001258342 NM_001258343 NM_001301079 NM_001350223 NM_152369
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC44A3
Cluster EST : UnigeneHs.483423 [ NCBI ]
CGAP (NCI)Hs.483423
Alternative Splicing GalleryENSG00000143036
Gene ExpressionSLC44A3 [ NCBI-GEO ]   SLC44A3 [ EBI - ARRAY_EXPRESS ]   SLC44A3 [ SEEK ]   SLC44A3 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC44A3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126969
GTEX Portal (Tissue expression)SLC44A3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N4M1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N4M1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N4M1
Splice isoforms : SwissVarQ8N4M1
PhosPhoSitePlusQ8N4M1
Domains : Interpro (EBI)Choline_transptr-like   
Domain families : Pfam (Sanger)Choline_transpo (PF04515)   
Domain families : Pfam (NCBI)pfam04515   
Conserved Domain (NCBI)SLC44A3
DMDM Disease mutations126969
Blocks (Seattle)SLC44A3
SuperfamilyQ8N4M1
Human Protein AtlasENSG00000143036
Peptide AtlasQ8N4M1
HPRD14637
IPIIPI00296714   IPI00396115   IPI00917110   IPI00983999   IPI00984686   IPI00647919   IPI00982635   IPI00982080   IPI00983382   
Protein Interaction databases
DIP (DOE-UCLA)Q8N4M1
IntAct (EBI)Q8N4M1
FunCoupENSG00000143036
BioGRIDSLC44A3
STRING (EMBL)SLC44A3
ZODIACSLC44A3
Ontologies - Pathways
QuickGOQ8N4M1
Ontology : AmiGOprotein binding  plasma membrane  phosphatidylcholine biosynthetic process  choline transmembrane transporter activity  choline transport  integral component of membrane  transmembrane transport  
Ontology : EGO-EBIprotein binding  plasma membrane  phosphatidylcholine biosynthetic process  choline transmembrane transporter activity  choline transport  integral component of membrane  transmembrane transport  
NDEx NetworkSLC44A3
Atlas of Cancer Signalling NetworkSLC44A3
Wikipedia pathwaysSLC44A3
Orthology - Evolution
OrthoDB126969
GeneTree (enSembl)ENSG00000143036
Phylogenetic Trees/Animal Genes : TreeFamSLC44A3
HOVERGENQ8N4M1
HOGENOMQ8N4M1
Homologs : HomoloGeneSLC44A3
Homology/Alignments : Family Browser (UCSC)SLC44A3
Gene fusions - Rearrangements
Fusion : MitelmanIFI44L/SLC44A3 [1p31.1/1p21.3]  [t(1;1)(p21;p31)]  
Fusion: TCGAIFI44L 1p31.1 SLC44A3 1p21.3 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC44A3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC44A3
dbVarSLC44A3
ClinVarSLC44A3
1000_GenomesSLC44A3 
Exome Variant ServerSLC44A3
ExAC (Exome Aggregation Consortium)SLC44A3 (select the gene name)
Genetic variants : HAPMAP126969
Genomic Variants (DGV)SLC44A3 [DGVbeta]
DECIPHERSLC44A3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC44A3 
Mutations
ICGC Data PortalSLC44A3 
TCGA Data PortalSLC44A3 
Broad Tumor PortalSLC44A3
OASIS PortalSLC44A3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC44A3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC44A3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC44A3
DgiDB (Drug Gene Interaction Database)SLC44A3
DoCM (Curated mutations)SLC44A3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC44A3 (select a term)
intoGenSLC44A3
Cancer3DSLC44A3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSLC44A3
Genetic Testing Registry SLC44A3
NextProtQ8N4M1 [Medical]
TSGene126969
GENETestsSLC44A3
Target ValidationSLC44A3
Huge Navigator SLC44A3 [HugePedia]
snp3D : Map Gene to Disease126969
BioCentury BCIQSLC44A3
ClinGenSLC44A3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD126969
Chemical/Pharm GKB GenePA142670900
Clinical trialSLC44A3
Miscellaneous
canSAR (ICR)SLC44A3 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC44A3
EVEXSLC44A3
GoPubMedSLC44A3
iHOPSLC44A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:56:11 CEST 2017

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