Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SLC44A4 (solute carrier family 44 member 4)

Identity

Alias (NCBI)C6orf29
CTL4
DFNA72
NG22
TPPT
hTPPT1
HGNC (Hugo) SLC44A4
HGNC Alias symbNG22
CTL4
FLJ14491
TPPT
HGNC Previous nameC6orf29
HGNC Previous namechromosome 6 open reading frame 29
 solute carrier family 44, member 4
LocusID (NCBI) 80736
Atlas_Id 73445
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31863193 and ends at 31878997 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BAG6 (6p21.33) / SLC44A4 (6p21.33)DAB2IP (9q33.2) / SLC44A4 (6p21.33)MYH9 (22q12.3) / SLC44A4 (6p21.33)
SLC44A4 (6p21.33) / ANKRD17 (4q13.3)SLC44A4 (6p21.33) / SLC44A4 (6p21.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)SLC44A4   13941
Cards
Entrez_Gene (NCBI)SLC44A4    solute carrier family 44 member 4
AliasesC6orf29; CTL4; DFNA72; NG22; 
TPPT; hTPPT1
GeneCards (Weizmann)SLC44A4
Ensembl hg19 (Hinxton)ENSG00000204385 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204385 [Gene_View]  ENSG00000204385 [Sequence]  chr6:31863193-31878997 [Contig_View]  SLC44A4 [Vega]
ICGC DataPortalENSG00000204385
TCGA cBioPortalSLC44A4
AceView (NCBI)SLC44A4
Genatlas (Paris)SLC44A4
SOURCE (Princeton)SLC44A4
Genetics Home Reference (NIH)SLC44A4
Genomic and cartography
GoldenPath hg38 (UCSC)SLC44A4  -     chr6:31863193-31878997 -  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC44A4  -     6p21.33   [Description]    (hg19-Feb_2009)
GoldenPathSLC44A4 - 6p21.33 [CytoView hg19]  SLC44A4 - 6p21.33 [CytoView hg38]
ImmunoBaseENSG00000204385
Genome Data Viewer NCBISLC44A4 [Mapview hg19]  
OMIM606107   617606   
Gene and transcription
Genbank (Entrez)AI560195 AI956094 AK027397 AK222998 AK223013
RefSeq transcript (Entrez)NM_001178044 NM_001178045 NM_025257
Consensus coding sequences : CCDS (NCBI)SLC44A4
Gene ExpressionSLC44A4 [ NCBI-GEO ]   SLC44A4 [ EBI - ARRAY_EXPRESS ]   SLC44A4 [ SEEK ]   SLC44A4 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC44A4 [ Firebrowse - Broad ]
GenevisibleExpression of SLC44A4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80736
GTEX Portal (Tissue expression)SLC44A4
Human Protein AtlasENSG00000204385-SLC44A4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SLC44A4
Human Protein Atlas [tissue]ENSG00000204385-SLC44A4 [tissue]
HPRD12087
Protein Interaction databases
BioGRIDSLC44A4
STRING (EMBL)SLC44A4
ZODIACSLC44A4
Ontologies - Pathways
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSLC44A4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:21:06 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.