Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SLC44A4 (solute carrier family 44 member 4)

Identity

Alias_namesC6orf29
chromosome 6 open reading frame 29
solute carrier family 44, member 4
Alias_symbol (synonym)NG22
CTL4
FLJ14491
TPPT
Other alias
HGNC (Hugo) SLC44A4
LocusID (NCBI) 80736
Atlas_Id 73445
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31863193 and ends at 31879046 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BAG6 (6p21.33) / SLC44A4 (6p21.33)DAB2IP (9q33.2) / SLC44A4 (6p21.33)MYH9 (22q12.3) / SLC44A4 (6p21.33)
SLC44A4 (6p21.33) / ANKRD17 (4q13.3)SLC44A4 (6p21.33) / SLC44A4 (6p21.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC44A4   13941
Cards
Entrez_Gene (NCBI)SLC44A4  80736  solute carrier family 44 member 4
AliasesC6orf29; CTL4; NG22; TPPT
GeneCards (Weizmann)SLC44A4
Ensembl hg19 (Hinxton)ENSG00000204385 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204385 [Gene_View]  chr6:31863193-31879046 [Contig_View]  SLC44A4 [Vega]
ICGC DataPortalENSG00000204385
TCGA cBioPortalSLC44A4
AceView (NCBI)SLC44A4
Genatlas (Paris)SLC44A4
WikiGenes80736
SOURCE (Princeton)SLC44A4
Genetics Home Reference (NIH)SLC44A4
Genomic and cartography
GoldenPath hg38 (UCSC)SLC44A4  -     chr6:31863193-31879046 -  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC44A4  -     6p21.33   [Description]    (hg19-Feb_2009)
EnsemblSLC44A4 - 6p21.33 [CytoView hg19]  SLC44A4 - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBISLC44A4 [Mapview hg19]  SLC44A4 [Mapview hg38]
OMIM606107   
Gene and transcription
Genbank (Entrez)AI560195 AI956094 AK027397 AK222998 AK223013
RefSeq transcript (Entrez)NM_001178044 NM_001178045 NM_025257
RefSeq genomic (Entrez)NC_000006 NC_018917 NG_023058 NT_113891 NT_167244 NT_167245 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)SLC44A4
Cluster EST : UnigeneHs.335355 [ NCBI ]
CGAP (NCI)Hs.335355
Alternative Splicing GalleryENSG00000204385
Gene ExpressionSLC44A4 [ NCBI-GEO ]   SLC44A4 [ EBI - ARRAY_EXPRESS ]   SLC44A4 [ SEEK ]   SLC44A4 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC44A4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80736
GTEX Portal (Tissue expression)SLC44A4
Human Protein AtlasENSG00000204385-SLC44A4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53GD3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ53GD3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ53GD3
Splice isoforms : SwissVarQ53GD3
PhosPhoSitePlusQ53GD3
Domains : Interpro (EBI)Choline_transptr-like   
Domain families : Pfam (Sanger)Choline_transpo (PF04515)   
Domain families : Pfam (NCBI)pfam04515   
Conserved Domain (NCBI)SLC44A4
DMDM Disease mutations80736
Blocks (Seattle)SLC44A4
SuperfamilyQ53GD3
Human Protein Atlas [tissue]ENSG00000204385-SLC44A4 [tissue]
Peptide AtlasQ53GD3
HPRD12087
IPIIPI00893953   IPI01021061   IPI00552359   IPI01020767   IPI00967925   IPI01021535   IPI01015518   IPI00964278   
Protein Interaction databases
DIP (DOE-UCLA)Q53GD3
IntAct (EBI)Q53GD3
FunCoupENSG00000204385
BioGRIDSLC44A4
STRING (EMBL)SLC44A4
ZODIACSLC44A4
Ontologies - Pathways
QuickGOQ53GD3
Ontology : AmiGOplasma membrane  phosphatidylcholine biosynthetic process  acetylcholine biosynthetic process  choline transmembrane transporter activity  choline transport  integral component of membrane  positive regulation of cell growth  transmembrane transport  acetylcholine secretion  extracellular exosome  
Ontology : EGO-EBIplasma membrane  phosphatidylcholine biosynthetic process  acetylcholine biosynthetic process  choline transmembrane transporter activity  choline transport  integral component of membrane  positive regulation of cell growth  transmembrane transport  acetylcholine secretion  extracellular exosome  
NDEx NetworkSLC44A4
Atlas of Cancer Signalling NetworkSLC44A4
Wikipedia pathwaysSLC44A4
Orthology - Evolution
OrthoDB80736
GeneTree (enSembl)ENSG00000204385
Phylogenetic Trees/Animal Genes : TreeFamSLC44A4
HOVERGENQ53GD3
HOGENOMQ53GD3
Homologs : HomoloGeneSLC44A4
Homology/Alignments : Family Browser (UCSC)SLC44A4
Gene fusions - Rearrangements
Fusion: Tumor Portal SLC44A4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC44A4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC44A4
dbVarSLC44A4
ClinVarSLC44A4
1000_GenomesSLC44A4 
Exome Variant ServerSLC44A4
ExAC (Exome Aggregation Consortium)ENSG00000204385
GNOMAD BrowserENSG00000204385
Genetic variants : HAPMAP80736
Genomic Variants (DGV)SLC44A4 [DGVbeta]
DECIPHERSLC44A4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC44A4 
Mutations
ICGC Data PortalSLC44A4 
TCGA Data PortalSLC44A4 
Broad Tumor PortalSLC44A4
OASIS PortalSLC44A4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC44A4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC44A4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC44A4
DgiDB (Drug Gene Interaction Database)SLC44A4
DoCM (Curated mutations)SLC44A4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC44A4 (select a term)
intoGenSLC44A4
Cancer3DSLC44A4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606107   
Orphanet
MedgenSLC44A4
Genetic Testing Registry SLC44A4
NextProtQ53GD3 [Medical]
TSGene80736
GENETestsSLC44A4
Target ValidationSLC44A4
Huge Navigator SLC44A4 [HugePedia]
snp3D : Map Gene to Disease80736
BioCentury BCIQSLC44A4
ClinGenSLC44A4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80736
Chemical/Pharm GKB GenePA25930
Clinical trialSLC44A4
Miscellaneous
canSAR (ICR)SLC44A4 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC44A4
EVEXSLC44A4
GoPubMedSLC44A4
iHOPSLC44A4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:27:41 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.