Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC44A5 (solute carrier family 44 member 5)

Identity

Other aliasCTL5
HGNC (Hugo) SLC44A5
LocusID (NCBI) 204962
Atlas_Id 56817
Location 1p31.1  [Link to chromosome band 1p31]
Location_base_pair Starts at 75202131 and ends at 75611114 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARL5A (2q23.3) / SLC44A5 (1p31.1)FUBP1 (1p31.1) / SLC44A5 (1p31.1)PARP14 (3q21.1) / SLC44A5 (1p31.1)
RABGGTB (1p31.1) / SLC44A5 (1p31.1)SLC44A5 (1p31.1) / ATP6V1C2 (2p25.1)SLC44A5 (1p31.1) / PLEKHA7 (11p15.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC44A5   28524
Cards
Entrez_Gene (NCBI)SLC44A5  204962  solute carrier family 44 member 5
AliasesCTL5
GeneCards (Weizmann)SLC44A5
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:75202131-75611114 [Contig_View]  SLC44A5 [Vega]
TCGA cBioPortalSLC44A5
AceView (NCBI)SLC44A5
Genatlas (Paris)SLC44A5
WikiGenes204962
SOURCE (Princeton)SLC44A5
Genetics Home Reference (NIH)SLC44A5
Genomic and cartography
GoldenPath hg38 (UCSC)SLC44A5  -     chr1:75202131-75611114 -  1p31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC44A5  -     1p31.1   [Description]    (hg19-Feb_2009)
EnsemblSLC44A5 - 1p31.1 [CytoView hg19]  SLC44A5 - 1p31.1 [CytoView hg38]
Mapping of homologs : NCBISLC44A5 [Mapview hg19]  SLC44A5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI922912 AK091400 AK093170 AK128063 AK296924
RefSeq transcript (Entrez)NM_001130058 NM_001320283 NM_001320285 NM_001320287 NM_152697
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC44A5
Cluster EST : UnigeneHs.662961 [ NCBI ]
CGAP (NCI)Hs.662961
Gene ExpressionSLC44A5 [ NCBI-GEO ]   SLC44A5 [ EBI - ARRAY_EXPRESS ]   SLC44A5 [ SEEK ]   SLC44A5 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC44A5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)204962
GTEX Portal (Tissue expression)SLC44A5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NCS7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NCS7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NCS7
Splice isoforms : SwissVarQ8NCS7
PhosPhoSitePlusQ8NCS7
Domains : Interpro (EBI)Choline_transptr-like   
Domain families : Pfam (Sanger)Choline_transpo (PF04515)   
Domain families : Pfam (NCBI)pfam04515   
Conserved Domain (NCBI)SLC44A5
DMDM Disease mutations204962
Blocks (Seattle)SLC44A5
SuperfamilyQ8NCS7
Peptide AtlasQ8NCS7
IPIIPI00168443   IPI00915889   IPI01015884   IPI00550651   IPI01010422   
Protein Interaction databases
DIP (DOE-UCLA)Q8NCS7
IntAct (EBI)Q8NCS7
BioGRIDSLC44A5
STRING (EMBL)SLC44A5
ZODIACSLC44A5
Ontologies - Pathways
QuickGOQ8NCS7
Ontology : AmiGOplasma membrane  phosphatidylcholine biosynthetic process  choline transmembrane transporter activity  choline transport  integral component of membrane  transmembrane transport  
Ontology : EGO-EBIplasma membrane  phosphatidylcholine biosynthetic process  choline transmembrane transporter activity  choline transport  integral component of membrane  transmembrane transport  
NDEx NetworkSLC44A5
Atlas of Cancer Signalling NetworkSLC44A5
Wikipedia pathwaysSLC44A5
Orthology - Evolution
OrthoDB204962
Phylogenetic Trees/Animal Genes : TreeFamSLC44A5
HOVERGENQ8NCS7
HOGENOMQ8NCS7
Homologs : HomoloGeneSLC44A5
Homology/Alignments : Family Browser (UCSC)SLC44A5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC44A5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC44A5
dbVarSLC44A5
ClinVarSLC44A5
1000_GenomesSLC44A5 
Exome Variant ServerSLC44A5
ExAC (Exome Aggregation Consortium)SLC44A5 (select the gene name)
Genetic variants : HAPMAP204962
Genomic Variants (DGV)SLC44A5 [DGVbeta]
DECIPHERSLC44A5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC44A5 
Mutations
ICGC Data PortalSLC44A5 
TCGA Data PortalSLC44A5 
Broad Tumor PortalSLC44A5
OASIS PortalSLC44A5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC44A5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC44A5
BioMutasearch SLC44A5
DgiDB (Drug Gene Interaction Database)SLC44A5
DoCM (Curated mutations)SLC44A5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC44A5 (select a term)
intoGenSLC44A5
Cancer3DSLC44A5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSLC44A5
Genetic Testing Registry SLC44A5
NextProtQ8NCS7 [Medical]
TSGene204962
GENETestsSLC44A5
Target ValidationSLC44A5
Huge Navigator SLC44A5 [HugePedia]
snp3D : Map Gene to Disease204962
BioCentury BCIQSLC44A5
ClinGenSLC44A5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD204962
Chemical/Pharm GKB GenePA142670901
Clinical trialSLC44A5
Miscellaneous
canSAR (ICR)SLC44A5 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC44A5
EVEXSLC44A5
GoPubMedSLC44A5
iHOPSLC44A5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:56:12 CEST 2017

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